Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC13.97□□□□□ -0.17
FOXA1P55317 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC13.97□□□□□ -0.17
FOXA1P55317 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC13.97□□□□□ -0.17
FOXA1P55317 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
FOXA1P55317 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
FOXA1P55317 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
FOXA1P55317 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC13.97□□□□□ -0.17
FOXA1P55317 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC13.97□□□□□ -0.17
FOXA1P55317 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.17
FOXA1P55317 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
FOXA1P55317 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC13.96□□□□□ -0.17
FOXA1P55317 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC13.96□□□□□ -0.17
FOXA1P55317 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA1P55317 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
FOXA1P55317 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA1P55317 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA1P55317 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA1P55317 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA1P55317 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA1P55317 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA1P55317 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA1P55317 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA1P55317 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA1P55317 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
FOXA1P55317 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.96□□□□□ -0.17
FOXA1P55317 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.96□□□□□ -0.17
FOXA1P55317 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA1P55317 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC13.96□□□□□ -0.17
FOXA1P55317 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
FOXA1P55317 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA1P55317 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA1P55317 COQ6-210ENST00000554920 649 ntTSL 3 BASIC13.96□□□□□ -0.17
FOXA1P55317 AL596325.1-201ENST00000563991 1082 ntBASIC13.96□□□□□ -0.17
FOXA1P55317 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
FOXA1P55317 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC13.96□□□□□ -0.17
FOXA1P55317 MIR4783-201ENST00000580343 82 ntBASIC13.96□□□□□ -0.17
FOXA1P55317 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC13.96□□□□□ -0.17
FOXA1P55317 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC13.96□□□□□ -0.17
FOXA1P55317 AC114271.1-201ENST00000612689 2813 ntBASIC13.96□□□□□ -0.17
FOXA1P55317 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
FOXA1P55317 TK2-221ENST00000620035 5060 ntTSL 2 BASIC13.96□□□□□ -0.17
FOXA1P55317 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA1P55317 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA1P55317 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
FOXA1P55317 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
FOXA1P55317 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC13.96□□□□□ -0.18
FOXA1P55317 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
FOXA1P55317 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC13.96□□□□□ -0.18
FOXA1P55317 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
FOXA1P55317 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
FOXA1P55317 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.18
FOXA1P55317 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
FOXA1P55317 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC13.95□□□□□ -0.18
FOXA1P55317 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 USP39-207ENST00000450066 2086 ntTSL 2 BASIC13.95□□□□□ -0.18
FOXA1P55317 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
FOXA1P55317 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC13.95□□□□□ -0.18
FOXA1P55317 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC13.95□□□□□ -0.18
FOXA1P55317 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 EDF1-203ENST00000371649 790 ntTSL 2 BASIC13.95□□□□□ -0.18
FOXA1P55317 AK6-201ENST00000380818 1183 ntTSL 2 BASIC13.95□□□□□ -0.18
FOXA1P55317 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
FOXA1P55317 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
FOXA1P55317 AL157407.1-201ENST00000435784 904 ntBASIC13.95□□□□□ -0.18
FOXA1P55317 HMGN1P19-201ENST00000436976 333 ntBASIC13.95□□□□□ -0.18
FOXA1P55317 ST13P19-201ENST00000442505 1124 ntBASIC13.95□□□□□ -0.18
FOXA1P55317 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC13.95□□□□□ -0.18
FOXA1P55317 CNN2P10-201ENST00000443067 918 ntBASIC13.95□□□□□ -0.18
FOXA1P55317 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 AL355994.2-201ENST00000447882 704 ntBASIC13.95□□□□□ -0.18
FOXA1P55317 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
FOXA1P55317 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC13.95□□□□□ -0.18
FOXA1P55317 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC13.95□□□□□ -0.18
FOXA1P55317 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.95□□□□□ -0.18
FOXA1P55317 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC13.95□□□□□ -0.18
FOXA1P55317 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC13.95□□□□□ -0.18
FOXA1P55317 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms