Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CDH6P55285 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CDH6P55285 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC15.02■□□□□ -0
CDH6P55285 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CDH6P55285 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC15.02■□□□□ -0
CDH6P55285 RPF1-202ENST00000370656 724 ntTSL 2 BASIC15.02■□□□□ -0
CDH6P55285 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC15.02■□□□□ -0
CDH6P55285 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC15.02■□□□□ -0
CDH6P55285 FAM58BP-201ENST00000439056 645 ntBASIC15.02■□□□□ -0
CDH6P55285 ST13P19-201ENST00000442505 1124 ntBASIC15.02■□□□□ -0
CDH6P55285 AC012441.2-201ENST00000444843 739 ntBASIC15.02■□□□□ -0
CDH6P55285 TMEM198B-204ENST00000484016 896 ntBASIC15.02■□□□□ -0
CDH6P55285 MFF-223ENST00000524634 647 ntTSL 2 BASIC15.02■□□□□ -0
CDH6P55285 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC15.02■□□□□ -0
CDH6P55285 AC005962.1-201ENST00000584100 773 ntBASIC15.02■□□□□ -0
CDH6P55285 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC15.02■□□□□ -0
CDH6P55285 AC021016.3-201ENST00000608367 477 ntBASIC15.02■□□□□ -0
CDH6P55285 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC15.02■□□□□ -0
CDH6P55285 AC009542.2-202ENST00000619004 1067 ntBASIC15.02■□□□□ -0
CDH6P55285 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC15.02■□□□□ -0
CDH6P55285 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC15.02■□□□□ -0
CDH6P55285 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC15.02□□□□□ -0.01
CDH6P55285 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
CDH6P55285 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
CDH6P55285 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CDH6P55285 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC15.02□□□□□ -0.01
CDH6P55285 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CDH6P55285 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CDH6P55285 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CDH6P55285 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CDH6P55285 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CDH6P55285 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CDH6P55285 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CDH6P55285 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
CDH6P55285 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
CDH6P55285 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
CDH6P55285 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
CDH6P55285 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CDH6P55285 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC15.02□□□□□ -0.01
CDH6P55285 AC015818.8-201ENST00000587907 1519 ntBASIC15.02□□□□□ -0.01
CDH6P55285 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
CDH6P55285 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.01□□□□□ -0.01
CDH6P55285 AC089987.1-201ENST00000551654 2209 ntBASIC15.01□□□□□ -0.01
CDH6P55285 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC15.01□□□□□ -0.01
CDH6P55285 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC15.01□□□□□ -0.01
CDH6P55285 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
CDH6P55285 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
CDH6P55285 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 DRG2-220ENST00000583355 891 ntTSL 3 BASIC15.01□□□□□ -0.01
CDH6P55285 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC15.01□□□□□ -0.01
CDH6P55285 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC15.01□□□□□ -0.01
CDH6P55285 RPL35-206ENST00000629845 340 ntTSL 5 BASIC15.01□□□□□ -0.01
CDH6P55285 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC15.01□□□□□ -0.01
CDH6P55285 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC15.01□□□□□ -0.01
CDH6P55285 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
CDH6P55285 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC15.01□□□□□ -0.01
CDH6P55285 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC15.01□□□□□ -0.01
CDH6P55285 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC15.01□□□□□ -0.01
CDH6P55285 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 LAP3P2-201ENST00000454686 1454 ntBASIC15.01□□□□□ -0.01
CDH6P55285 AL031595.1-201ENST00000623969 4709 ntBASIC15.01□□□□□ -0.01
CDH6P55285 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CDH6P55285 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
CDH6P55285 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
CDH6P55285 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC15□□□□□ -0.01
CDH6P55285 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CDH6P55285 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC15□□□□□ -0.01
CDH6P55285 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
CDH6P55285 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
CDH6P55285 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CDH6P55285 MBLAC2-202ENST00000514906 1936 ntBASIC15□□□□□ -0.01
CDH6P55285 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC15□□□□□ -0.01
CDH6P55285 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC15□□□□□ -0.01
CDH6P55285 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC15□□□□□ -0.01
CDH6P55285 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC15□□□□□ -0.01
CDH6P55285 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms