Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC14.28□□□□□ -0.12
COL6A2P12110 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A2P12110 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A2P12110 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
COL6A2P12110 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A2P12110 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A2P12110 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A2P12110 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A2P12110 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC14.28□□□□□ -0.12
COL6A2P12110 TP73-207ENST00000378290 1831 ntTSL 2 BASIC14.28□□□□□ -0.12
COL6A2P12110 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A2P12110 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC14.28□□□□□ -0.12
COL6A2P12110 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A2P12110 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC14.28□□□□□ -0.12
COL6A2P12110 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC14.28□□□□□ -0.12
COL6A2P12110 CNN2P8-201ENST00000421872 913 ntBASIC14.28□□□□□ -0.12
COL6A2P12110 SHC1P1-201ENST00000425230 1745 ntBASIC14.28□□□□□ -0.12
COL6A2P12110 RGS5-214ENST00000429865 754 ntTSL 3 BASIC14.28□□□□□ -0.12
COL6A2P12110 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC14.28□□□□□ -0.12
COL6A2P12110 AC016694.1-201ENST00000434179 700 ntBASIC14.28□□□□□ -0.12
COL6A2P12110 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.28□□□□□ -0.12
COL6A2P12110 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC14.28□□□□□ -0.12
COL6A2P12110 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.28□□□□□ -0.12
COL6A2P12110 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.28□□□□□ -0.12
COL6A2P12110 AC019294.4-201ENST00000561777 2905 ntBASIC14.28□□□□□ -0.12
COL6A2P12110 AC135782.3-201ENST00000562782 2105 ntBASIC14.28□□□□□ -0.12
COL6A2P12110 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.28□□□□□ -0.12
COL6A2P12110 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A2P12110 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC14.28□□□□□ -0.12
COL6A2P12110 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A2P12110 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A2P12110 REXO1L6P-201ENST00000603433 1515 ntBASIC14.28□□□□□ -0.12
COL6A2P12110 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC14.28□□□□□ -0.12
COL6A2P12110 LARP4-220ENST00000615080 856 ntTSL 5 BASIC14.28□□□□□ -0.12
COL6A2P12110 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A2P12110 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A2P12110 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A2P12110 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A2P12110 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A2P12110 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC14.28□□□□□ -0.12
COL6A2P12110 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A2P12110 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
COL6A2P12110 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
COL6A2P12110 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A2P12110 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
COL6A2P12110 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC14.27□□□□□ -0.12
COL6A2P12110 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC14.27□□□□□ -0.12
COL6A2P12110 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC14.27□□□□□ -0.12
COL6A2P12110 AC068760.1-201ENST00000493579 1953 ntBASIC14.27□□□□□ -0.12
COL6A2P12110 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC14.27□□□□□ -0.12
COL6A2P12110 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL6A2P12110 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
COL6A2P12110 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL6A2P12110 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL6A2P12110 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL6A2P12110 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
COL6A2P12110 AC009474.1-201ENST00000455096 1565 ntBASIC14.27□□□□□ -0.12
COL6A2P12110 AL118506.1-201ENST00000601296 3082 ntBASIC14.27□□□□□ -0.12
COL6A2P12110 AL354989.2-201ENST00000435838 1540 ntBASIC14.27□□□□□ -0.12
COL6A2P12110 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC14.27□□□□□ -0.12
COL6A2P12110 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.27□□□□□ -0.12
COL6A2P12110 LAP3P2-201ENST00000454686 1454 ntBASIC14.27□□□□□ -0.12
COL6A2P12110 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
COL6A2P12110 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC14.27□□□□□ -0.12
COL6A2P12110 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
COL6A2P12110 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.27□□□□□ -0.12
COL6A2P12110 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
COL6A2P12110 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL6A2P12110 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A2P12110 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A2P12110 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A2P12110 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A2P12110 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
COL6A2P12110 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.27□□□□□ -0.13
COL6A2P12110 FAM197Y7-201ENST00000432892 766 ntBASIC14.27□□□□□ -0.13
COL6A2P12110 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A2P12110 AL355994.2-201ENST00000447882 704 ntBASIC14.27□□□□□ -0.13
COL6A2P12110 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A2P12110 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.27□□□□□ -0.13
COL6A2P12110 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.27□□□□□ -0.13
COL6A2P12110 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC14.27□□□□□ -0.13
COL6A2P12110 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC14.27□□□□□ -0.13
COL6A2P12110 MIR4745-201ENST00000577608 62 ntBASIC14.27□□□□□ -0.13
COL6A2P12110 AC021016.3-201ENST00000608367 477 ntBASIC14.27□□□□□ -0.13
COL6A2P12110 AL022328.1-201ENST00000610050 478 ntBASIC14.27□□□□□ -0.13
COL6A2P12110 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC14.27□□□□□ -0.13
COL6A2P12110 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A2P12110 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC14.27□□□□□ -0.13
COL6A2P12110 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A2P12110 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A2P12110 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A2P12110 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
COL6A2P12110 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A2P12110 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A2P12110 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A2P12110 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A2P12110 GOLGA8IP-202ENST00000611635 2100 ntBASIC14.27□□□□□ -0.13
COL6A2P12110 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
COL6A2P12110 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A2P12110 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms