Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC13.7□□□□□ -0.22
LIM2P55344 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
LIM2P55344 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
LIM2P55344 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
LIM2P55344 KRT18P36-201ENST00000411618 1276 ntBASIC13.7□□□□□ -0.22
LIM2P55344 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC13.7□□□□□ -0.22
LIM2P55344 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC13.7□□□□□ -0.22
LIM2P55344 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC13.7□□□□□ -0.22
LIM2P55344 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC13.7□□□□□ -0.22
LIM2P55344 AC004898.1-201ENST00000451057 766 ntBASIC13.7□□□□□ -0.22
LIM2P55344 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 AC106794.1-201ENST00000506935 792 ntBASIC13.7□□□□□ -0.22
LIM2P55344 AC005740.2-201ENST00000511085 419 ntBASIC13.7□□□□□ -0.22
LIM2P55344 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
LIM2P55344 AC003686.1-201ENST00000550956 1034 ntBASIC13.7□□□□□ -0.22
LIM2P55344 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC13.7□□□□□ -0.22
LIM2P55344 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC13.7□□□□□ -0.22
LIM2P55344 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC13.7□□□□□ -0.22
LIM2P55344 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC13.7□□□□□ -0.22
LIM2P55344 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC13.7□□□□□ -0.22
LIM2P55344 NKG7-204ENST00000595217 816 ntTSL 2 BASIC13.7□□□□□ -0.22
LIM2P55344 AL022328.3-201ENST00000607943 679 ntBASIC13.7□□□□□ -0.22
LIM2P55344 AC090164.2-201ENST00000611487 516 ntBASIC13.7□□□□□ -0.22
LIM2P55344 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC13.7□□□□□ -0.22
LIM2P55344 AL136295.7-201ENST00000619226 1200 ntBASIC13.7□□□□□ -0.22
LIM2P55344 MIR6869-201ENST00000619434 62 ntBASIC13.7□□□□□ -0.22
LIM2P55344 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC13.7□□□□□ -0.22
LIM2P55344 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
LIM2P55344 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC13.7□□□□□ -0.22
LIM2P55344 AC130686.1-201ENST00000622936 2466 ntBASIC13.7□□□□□ -0.22
LIM2P55344 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC13.7□□□□□ -0.22
LIM2P55344 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC13.7□□□□□ -0.22
LIM2P55344 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC13.7□□□□□ -0.22
LIM2P55344 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
LIM2P55344 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
LIM2P55344 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC13.7□□□□□ -0.22
LIM2P55344 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC13.7□□□□□ -0.22
LIM2P55344 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
LIM2P55344 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC13.69□□□□□ -0.22
LIM2P55344 LSS-211ENST00000522411 2523 ntTSL 2 BASIC13.69□□□□□ -0.22
LIM2P55344 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
LIM2P55344 MAPT-IT1-201ENST00000624111 3016 ntBASIC13.69□□□□□ -0.22
LIM2P55344 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
LIM2P55344 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC13.69□□□□□ -0.22
LIM2P55344 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.69□□□□□ -0.22
LIM2P55344 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
LIM2P55344 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 NPPA-201ENST00000376476 728 ntTSL 3 BASIC13.69□□□□□ -0.22
LIM2P55344 HNRNPA1P32-201ENST00000396326 963 ntBASIC13.69□□□□□ -0.22
LIM2P55344 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC13.69□□□□□ -0.22
LIM2P55344 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC13.69□□□□□ -0.22
LIM2P55344 AC006033.1-201ENST00000440505 426 ntBASIC13.69□□□□□ -0.22
LIM2P55344 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC13.69□□□□□ -0.22
LIM2P55344 AC044849.1-201ENST00000519737 1188 ntBASIC13.69□□□□□ -0.22
LIM2P55344 FADS2-212ENST00000522639 360 ntTSL 5 BASIC13.69□□□□□ -0.22
LIM2P55344 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC13.69□□□□□ -0.22
LIM2P55344 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC13.69□□□□□ -0.22
LIM2P55344 SNORD3B-2-202ENST00000571722 791 ntBASIC13.69□□□□□ -0.22
LIM2P55344 FADS2-215ENST00000574708 385 ntTSL 3 BASIC13.69□□□□□ -0.22
LIM2P55344 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC13.69□□□□□ -0.22
LIM2P55344 AC021016.3-201ENST00000608367 477 ntBASIC13.69□□□□□ -0.22
LIM2P55344 DDX5-235ENST00000630471 473 ntTSL 4 BASIC13.69□□□□□ -0.22
LIM2P55344 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
LIM2P55344 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC13.69□□□□□ -0.22
LIM2P55344 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC13.69□□□□□ -0.22
LIM2P55344 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
LIM2P55344 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
LIM2P55344 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms