Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC13.28□□□□□ -0.28
MSX1P28360 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC13.28□□□□□ -0.28
MSX1P28360 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC13.28□□□□□ -0.28
MSX1P28360 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC13.28□□□□□ -0.28
MSX1P28360 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC13.28□□□□□ -0.28
MSX1P28360 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC13.28□□□□□ -0.28
MSX1P28360 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 MIR4722-201ENST00000578292 60 ntBASIC13.28□□□□□ -0.28
MSX1P28360 RN7SL163P-201ENST00000583100 276 ntBASIC13.28□□□□□ -0.28
MSX1P28360 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
MSX1P28360 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC13.28□□□□□ -0.28
MSX1P28360 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC13.28□□□□□ -0.28
MSX1P28360 BNIP3P13-201ENST00000599968 566 ntBASIC13.28□□□□□ -0.28
MSX1P28360 AC133540.1-201ENST00000620845 1019 ntBASIC13.28□□□□□ -0.28
MSX1P28360 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC13.28□□□□□ -0.28
MSX1P28360 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.28□□□□□ -0.28
MSX1P28360 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 TUBBP5-203ENST00000508529 1334 ntBASIC13.28□□□□□ -0.28
MSX1P28360 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.28□□□□□ -0.28
MSX1P28360 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC13.28□□□□□ -0.28
MSX1P28360 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC13.28□□□□□ -0.28
MSX1P28360 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC13.28□□□□□ -0.28
MSX1P28360 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC13.28□□□□□ -0.28
MSX1P28360 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
MSX1P28360 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
MSX1P28360 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
MSX1P28360 FAS-202ENST00000352159 1722 ntTSL 5 BASIC13.27□□□□□ -0.28
MSX1P28360 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
MSX1P28360 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
MSX1P28360 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
MSX1P28360 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC13.27□□□□□ -0.28
MSX1P28360 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
MSX1P28360 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.27□□□□□ -0.28
MSX1P28360 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
MSX1P28360 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.27□□□□□ -0.28
MSX1P28360 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
MSX1P28360 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC13.27□□□□□ -0.28
MSX1P28360 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
MSX1P28360 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
MSX1P28360 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
MSX1P28360 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
MSX1P28360 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC13.27□□□□□ -0.29
MSX1P28360 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
MSX1P28360 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC13.27□□□□□ -0.29
MSX1P28360 CRCP-204ENST00000398684 492 ntTSL 2 BASIC13.27□□□□□ -0.29
MSX1P28360 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC13.27□□□□□ -0.29
MSX1P28360 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC13.27□□□□□ -0.29
MSX1P28360 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC13.27□□□□□ -0.29
MSX1P28360 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC13.27□□□□□ -0.29
MSX1P28360 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC13.27□□□□□ -0.29
MSX1P28360 ST13P19-201ENST00000442505 1124 ntBASIC13.27□□□□□ -0.29
MSX1P28360 KLF2P1-201ENST00000447438 1042 ntBASIC13.27□□□□□ -0.29
MSX1P28360 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
MSX1P28360 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
MSX1P28360 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC13.27□□□□□ -0.29
MSX1P28360 OARD1-204ENST00000464633 717 ntTSL 2 BASIC13.27□□□□□ -0.29
MSX1P28360 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC13.27□□□□□ -0.29
MSX1P28360 AC022217.1-201ENST00000521069 738 ntBASIC13.27□□□□□ -0.29
MSX1P28360 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC13.27□□□□□ -0.29
MSX1P28360 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC13.27□□□□□ -0.29
MSX1P28360 AL160314.3-201ENST00000556041 767 ntBASIC13.27□□□□□ -0.29
MSX1P28360 MIR4706-201ENST00000582134 82 ntBASIC13.27□□□□□ -0.29
MSX1P28360 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC13.27□□□□□ -0.29
MSX1P28360 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC13.27□□□□□ -0.29
MSX1P28360 AC104506.1-201ENST00000609247 429 ntBASIC13.27□□□□□ -0.29
MSX1P28360 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC13.27□□□□□ -0.29
MSX1P28360 AC100757.4-201ENST00000626934 759 ntBASIC13.27□□□□□ -0.29
MSX1P28360 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC13.27□□□□□ -0.29
MSX1P28360 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC13.27□□□□□ -0.29
MSX1P28360 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC13.27□□□□□ -0.29
MSX1P28360 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
MSX1P28360 AC144522.1-201ENST00000625111 1658 ntBASIC13.27□□□□□ -0.29
MSX1P28360 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
MSX1P28360 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC13.27□□□□□ -0.29
MSX1P28360 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
MSX1P28360 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
MSX1P28360 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
MSX1P28360 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
MSX1P28360 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC13.27□□□□□ -0.29
MSX1P28360 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
MSX1P28360 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC13.27□□□□□ -0.29
MSX1P28360 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
MSX1P28360 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC13.27□□□□□ -0.29
MSX1P28360 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.27□□□□□ -0.29
MSX1P28360 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.27□□□□□ -0.29
MSX1P28360 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
MSX1P28360 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
MSX1P28360 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
MSX1P28360 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC13.26□□□□□ -0.29
MSX1P28360 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms