Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC015656.1-201ENST00000624209 3578 ntBASIC14.78□□□□□ -0.04
HMGA1P17096 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
HMGA1P17096 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGA1P17096 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
HMGA1P17096 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
HMGA1P17096 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HMGA1P17096 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HMGA1P17096 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
HMGA1P17096 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.04
HMGA1P17096 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.77□□□□□ -0.04
HMGA1P17096 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
HMGA1P17096 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.77□□□□□ -0.04
HMGA1P17096 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
HMGA1P17096 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC14.77□□□□□ -0.04
HMGA1P17096 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HMGA1P17096 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HMGA1P17096 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC14.77□□□□□ -0.04
HMGA1P17096 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HMGA1P17096 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HMGA1P17096 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
HMGA1P17096 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC14.77□□□□□ -0.05
HMGA1P17096 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC14.77□□□□□ -0.05
HMGA1P17096 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC14.77□□□□□ -0.05
HMGA1P17096 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC14.77□□□□□ -0.05
HMGA1P17096 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC14.77□□□□□ -0.05
HMGA1P17096 AC004837.1-201ENST00000446267 564 ntBASIC14.77□□□□□ -0.05
HMGA1P17096 PIN4P1-201ENST00000451079 396 ntBASIC14.77□□□□□ -0.05
HMGA1P17096 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC14.77□□□□□ -0.05
HMGA1P17096 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC14.77□□□□□ -0.05
HMGA1P17096 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC14.77□□□□□ -0.05
HMGA1P17096 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HMGA1P17096 AC091769.1-201ENST00000619576 568 ntBASIC14.77□□□□□ -0.05
HMGA1P17096 AL132780.4-201ENST00000624870 1135 ntBASIC14.77□□□□□ -0.05
HMGA1P17096 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
HMGA1P17096 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
HMGA1P17096 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HMGA1P17096 AC019109.1-201ENST00000401725 1874 ntBASIC14.77□□□□□ -0.05
HMGA1P17096 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HMGA1P17096 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
HMGA1P17096 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HMGA1P17096 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.77□□□□□ -0.05
HMGA1P17096 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HMGA1P17096 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
HMGA1P17096 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
HMGA1P17096 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC14.77□□□□□ -0.05
HMGA1P17096 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC14.77□□□□□ -0.05
HMGA1P17096 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HMGA1P17096 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HMGA1P17096 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.76□□□□□ -0.05
HMGA1P17096 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC14.76□□□□□ -0.05
HMGA1P17096 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
HMGA1P17096 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14.76□□□□□ -0.05
HMGA1P17096 RNVU1-8-201ENST00000364272 125 ntBASIC14.76□□□□□ -0.05
HMGA1P17096 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
HMGA1P17096 AL627389.1-201ENST00000413508 1182 ntBASIC14.76□□□□□ -0.05
HMGA1P17096 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 RN7SL767P-201ENST00000493013 295 ntBASIC14.76□□□□□ -0.05
HMGA1P17096 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC14.76□□□□□ -0.05
HMGA1P17096 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC14.76□□□□□ -0.05
HMGA1P17096 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC14.76□□□□□ -0.05
HMGA1P17096 KRT8P2-201ENST00000556193 944 ntBASIC14.76□□□□□ -0.05
HMGA1P17096 MIR4265-201ENST00000582152 99 ntBASIC14.76□□□□□ -0.05
HMGA1P17096 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC14.76□□□□□ -0.05
HMGA1P17096 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC14.76□□□□□ -0.05
HMGA1P17096 HPX-213ENST00000615166 826 ntTSL 5 BASIC14.76□□□□□ -0.05
HMGA1P17096 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC14.76□□□□□ -0.05
HMGA1P17096 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
HMGA1P17096 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
HMGA1P17096 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.76□□□□□ -0.05
HMGA1P17096 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC14.76□□□□□ -0.05
HMGA1P17096 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
HMGA1P17096 BX640514.1-201ENST00000583223 1918 ntBASIC14.76□□□□□ -0.05
HMGA1P17096 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGA1P17096 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC14.76□□□□□ -0.05
HMGA1P17096 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms