Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 CCDC18-203ENST00000401026 4552 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 HSPH1-204ENST00000445273 4987 ntTSL 2 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 TNK2-208ENST00000428187 4235 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 KIF21B-202ENST00000360529 5389 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 SPTB-202ENST00000389720 6321 ntTSL 5 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 FLNA-204ENST00000369856 8241 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 ABI1-213ENST00000536334 3380 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 CHL1-201ENST00000256509 8023 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 TMEM120B-204ENST00000449592 7461 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 AC055876.3-201ENST00000431496 288 ntBASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 AC120045.2-201ENST00000567334 178 ntBASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 SPDYE22P-201ENST00000582158 798 ntBASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 RNA5-8SN1-201ENST00000610460 153 ntBASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 AC138649.4-201ENST00000612222 287 ntBASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 RNA5-8SN5-202ENST00000612463 153 ntBASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 RNA5-8SN4-201ENST00000613359 153 ntBASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 RNA5-8SN5-201ENST00000619471 153 ntBASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 CD38-201ENST00000226279 5668 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 NQO2-205ENST00000380455 10084 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 ACACA-237ENST00000616317 9961 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 UGT3A1-201ENST00000274278 5122 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 AMOTL2-202ENST00000422605 4335 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 LANCL1-205ENST00000443314 4781 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CHMP1AQ9HD42 LDB3-205ENST00000429277 5436 ntTSL 2 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 POM121L4P-202ENST00000427789 1891 ntBASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 IKZF1-211ENST00000440768 5511 ntTSL 5 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 HDLBP-214ENST00000427183 6238 ntTSL 2 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 RNU1-114P-201ENST00000365297 166 ntBASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC12.55□□□□□ -0.4
CHMP1AQ9HD42 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms