Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 RN7SL163P-201ENST00000583100 276 ntBASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 AL136295.7-201ENST00000619226 1200 ntBASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 AL162426.1-201ENST00000624141 743 ntBASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 BAIAP2-202ENST00000321300 2879 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 AC092117.1-201ENST00000621230 3250 ntBASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 ELN-211ENST00000414324 3139 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 AC004899.1-201ENST00000424687 1714 ntBASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 INVS-201ENST00000262456 2968 ntTSL 5 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 AC007292.2-201ENST00000593524 1812 ntBASIC14.08□□□□□ -0.15
CLIP3Q96DZ5 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLIP3Q96DZ5 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLIP3Q96DZ5 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC14.08□□□□□ -0.15
CLIP3Q96DZ5 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.15
CLIP3Q96DZ5 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLIP3Q96DZ5 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLIP3Q96DZ5 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.08□□□□□ -0.15
CLIP3Q96DZ5 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLIP3Q96DZ5 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CLIP3Q96DZ5 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CLIP3Q96DZ5 ZNF519-206ENST00000589498 2117 ntTSL 2 BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 AC010141.1-201ENST00000411585 623 ntBASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 AC011742.3-201ENST00000439053 820 ntBASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 FAM58BP-201ENST00000439056 645 ntBASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 AC013355.1-201ENST00000562625 723 ntBASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 AC009955.4-201ENST00000597192 544 ntBASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 BNIP3P13-201ENST00000599968 566 ntBASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 AC008825.2-201ENST00000603374 718 ntBASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 AC004923.1-202ENST00000642106 209 ntBASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.08□□□□□ -0.16
CLIP3Q96DZ5 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms