Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL5A1P20908 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC13.47□□□□□ -0.25
COL5A1P20908 AC104961.1-201ENST00000427605 771 ntBASIC13.47□□□□□ -0.25
COL5A1P20908 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC13.47□□□□□ -0.25
COL5A1P20908 SOD2-205ENST00000444946 917 ntTSL 2 BASIC13.47□□□□□ -0.25
COL5A1P20908 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC13.47□□□□□ -0.25
COL5A1P20908 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC13.47□□□□□ -0.25
COL5A1P20908 SEPHS2P1-201ENST00000511618 1162 ntBASIC13.47□□□□□ -0.25
COL5A1P20908 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL5A1P20908 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC13.47□□□□□ -0.25
COL5A1P20908 AC073869.4-201ENST00000620841 800 ntBASIC13.47□□□□□ -0.25
COL5A1P20908 AC126755.5-201ENST00000622756 267 ntBASIC13.47□□□□□ -0.25
COL5A1P20908 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.47□□□□□ -0.25
COL5A1P20908 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC13.47□□□□□ -0.25
COL5A1P20908 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL5A1P20908 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL5A1P20908 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL5A1P20908 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL5A1P20908 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC13.47□□□□□ -0.25
COL5A1P20908 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC13.47□□□□□ -0.25
COL5A1P20908 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL5A1P20908 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL5A1P20908 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL5A1P20908 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL5A1P20908 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL5A1P20908 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
COL5A1P20908 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL5A1P20908 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC13.47□□□□□ -0.25
COL5A1P20908 AC015909.5-201ENST00000624336 2266 ntBASIC13.47□□□□□ -0.25
COL5A1P20908 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC13.46□□□□□ -0.25
COL5A1P20908 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL5A1P20908 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC13.46□□□□□ -0.25
COL5A1P20908 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL5A1P20908 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL5A1P20908 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL5A1P20908 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
COL5A1P20908 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
COL5A1P20908 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL5A1P20908 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
COL5A1P20908 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
COL5A1P20908 EEF1DP5-201ENST00000431410 772 ntBASIC13.46□□□□□ -0.25
COL5A1P20908 ZNF877P-201ENST00000437614 612 ntBASIC13.46□□□□□ -0.25
COL5A1P20908 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL5A1P20908 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL5A1P20908 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC13.46□□□□□ -0.25
COL5A1P20908 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC13.46□□□□□ -0.25
COL5A1P20908 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC13.46□□□□□ -0.25
COL5A1P20908 AL359219.1-201ENST00000556311 934 ntBASIC13.46□□□□□ -0.25
COL5A1P20908 AL590235.1-201ENST00000564650 861 ntBASIC13.46□□□□□ -0.25
COL5A1P20908 FBXO36P1-201ENST00000579006 471 ntBASIC13.46□□□□□ -0.25
COL5A1P20908 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC13.46□□□□□ -0.25
COL5A1P20908 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC13.46□□□□□ -0.25
COL5A1P20908 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC13.46□□□□□ -0.25
COL5A1P20908 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC13.46□□□□□ -0.25
COL5A1P20908 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
COL5A1P20908 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL5A1P20908 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL5A1P20908 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL5A1P20908 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
COL5A1P20908 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL5A1P20908 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
COL5A1P20908 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL5A1P20908 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL5A1P20908 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
COL5A1P20908 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL5A1P20908 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
COL5A1P20908 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL5A1P20908 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
COL5A1P20908 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL5A1P20908 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
COL5A1P20908 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL5A1P20908 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC13.46□□□□□ -0.26
COL5A1P20908 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC13.46□□□□□ -0.26
COL5A1P20908 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL5A1P20908 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
COL5A1P20908 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL5A1P20908 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL5A1P20908 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC13.46□□□□□ -0.26
COL5A1P20908 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL5A1P20908 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL5A1P20908 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC13.46□□□□□ -0.26
COL5A1P20908 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC13.46□□□□□ -0.26
COL5A1P20908 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL5A1P20908 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
COL5A1P20908 AC004801.1-201ENST00000549557 360 ntBASIC13.46□□□□□ -0.26
COL5A1P20908 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
COL5A1P20908 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC13.46□□□□□ -0.26
COL5A1P20908 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC13.46□□□□□ -0.26
COL5A1P20908 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC13.46□□□□□ -0.26
COL5A1P20908 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL5A1P20908 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL5A1P20908 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
COL5A1P20908 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
COL5A1P20908 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
COL5A1P20908 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms