Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 WDR60-202ENST00000407559 3769 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CXCL1P09341 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
CXCL1P09341 AC092171.2-201ENST00000444210 3251 ntTSL 5 BASIC11.24□□□□□ -0.61
CXCL1P09341 MAP2-201ENST00000199940 2241 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
CXCL1P09341 AL359510.2-201ENST00000624958 2249 ntBASIC11.24□□□□□ -0.61
CXCL1P09341 PPCDC-201ENST00000342932 2250 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CXCL1P09341 SPATA2-202ENST00000422556 4138 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
CXCL1P09341 CLGN-201ENST00000325617 3043 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CXCL1P09341 AC022364.1-202ENST00000617468 2409 ntBASIC11.24□□□□□ -0.61
CXCL1P09341 AC007666.1-201ENST00000443935 1838 ntTSL 5 BASIC11.24□□□□□ -0.61
CXCL1P09341 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC11.24□□□□□ -0.61
CXCL1P09341 INTS6L-201ENST00000370752 3793 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CXCL1P09341 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
CXCL1P09341 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CXCL1P09341 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
CXCL1P09341 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC11.24□□□□□ -0.61
CXCL1P09341 AL450487.1-201ENST00000426799 995 ntBASIC11.24□□□□□ -0.61
CXCL1P09341 AL592309.1-201ENST00000443127 649 ntBASIC11.24□□□□□ -0.61
CXCL1P09341 TIMM8BP1-201ENST00000452384 211 ntBASIC11.24□□□□□ -0.61
CXCL1P09341 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC11.24□□□□□ -0.61
CXCL1P09341 SERBP1P3-201ENST00000459980 809 ntBASIC11.24□□□□□ -0.61
CXCL1P09341 RPL13AP23-201ENST00000480739 586 ntBASIC11.24□□□□□ -0.61
CXCL1P09341 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC11.24□□□□□ -0.61
CXCL1P09341 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC11.24□□□□□ -0.61
CXCL1P09341 SAMD11P1-201ENST00000571429 661 ntBASIC11.24□□□□□ -0.61
CXCL1P09341 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC11.24□□□□□ -0.61
CXCL1P09341 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC11.24□□□□□ -0.61
CXCL1P09341 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC11.24□□□□□ -0.61
CXCL1P09341 AC027601.4-201ENST00000611259 610 ntBASIC11.24□□□□□ -0.61
CXCL1P09341 AC007967.4-201ENST00000614700 386 ntBASIC11.24□□□□□ -0.61
CXCL1P09341 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC11.24□□□□□ -0.61
CXCL1P09341 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC11.24□□□□□ -0.61
CXCL1P09341 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC11.24□□□□□ -0.61
CXCL1P09341 NLRP7-201ENST00000328092 3299 ntAPPRIS P3 TSL 5 BASIC11.24□□□□□ -0.61
CXCL1P09341 NDRG4-236ENST00000566192 3265 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
CXCL1P09341 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
CXCL1P09341 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
CXCL1P09341 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC11.24□□□□□ -0.61
CXCL1P09341 HYOU1-221ENST00000621959 3358 ntTSL 2 BASIC11.24□□□□□ -0.61
CXCL1P09341 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CXCL1P09341 AC009336.2-201ENST00000468418 3521 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
CXCL1P09341 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CXCL1P09341 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
CXCL1P09341 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
CXCL1P09341 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
CXCL1P09341 ATXN2L-201ENST00000325215 3788 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
CXCL1P09341 APOBR-202ENST00000564831 3792 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
CXCL1P09341 QRICH1-204ENST00000424300 3009 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
CXCL1P09341 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
CXCL1P09341 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
CXCL1P09341 CUL4A-203ENST00000375441 4037 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
CXCL1P09341 FERMT2-202ENST00000343279 3247 ntTSL 5 BASIC11.24□□□□□ -0.61
CXCL1P09341 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CXCL1P09341 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC11.24□□□□□ -0.61
CXCL1P09341 BCL2L1-203ENST00000376062 2578 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 SDR9C7-201ENST00000293502 1765 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 RERE-212ENST00000476556 4598 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 DTX2P1-UPK3BP1-PMS2P11-203ENST00000636308 4646 ntTSL 5 BASIC11.23□□□□□ -0.61
CXCL1P09341 DLGAP1-AS1-201ENST00000317114 1966 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 SGSM3-201ENST00000248929 2969 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 LENG8-201ENST00000326764 3991 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 DDX5-210ENST00000578804 2021 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC11.23□□□□□ -0.61
CXCL1P09341 BTBD3-204ENST00000405977 5137 ntAPPRIS P4 TSL 5 BASIC11.23□□□□□ -0.61
CXCL1P09341 ITIH5-201ENST00000397145 3132 ntTSL 2 BASIC11.23□□□□□ -0.61
CXCL1P09341 HPSE2-202ENST00000370549 2121 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 GHITM-201ENST00000372134 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 ESYT3-202ENST00000389567 4407 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 CTBP1-AS2-206ENST00000581398 5652 ntBASIC11.23□□□□□ -0.61
CXCL1P09341 UBE2W-201ENST00000419880 2315 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 AC048382.5-201ENST00000618330 3667 ntTSL 5 BASIC11.23□□□□□ -0.61
CXCL1P09341 ADAMTSL2-202ENST00000393060 3725 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
CXCL1P09341 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC11.23□□□□□ -0.61
CXCL1P09341 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
CXCL1P09341 TOMM22P5-201ENST00000416399 439 ntBASIC11.23□□□□□ -0.61
CXCL1P09341 AC074338.1-201ENST00000416825 156 ntBASIC11.23□□□□□ -0.61
CXCL1P09341 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC11.23□□□□□ -0.61
CXCL1P09341 KRT18P3-201ENST00000451602 1288 ntBASIC11.23□□□□□ -0.61
CXCL1P09341 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC11.23□□□□□ -0.61
CXCL1P09341 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC11.23□□□□□ -0.61
CXCL1P09341 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC11.23□□□□□ -0.61
CXCL1P09341 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 ALG1L8P-201ENST00000533887 760 ntBASIC11.23□□□□□ -0.61
CXCL1P09341 RPL18-209ENST00000550645 463 ntTSL 5 BASIC11.23□□□□□ -0.61
CXCL1P09341 RPL18-214ENST00000552588 559 ntTSL 3 BASIC11.23□□□□□ -0.61
CXCL1P09341 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC11.23□□□□□ -0.61
CXCL1P09341 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC11.23□□□□□ -0.61
CXCL1P09341 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC11.23□□□□□ -0.61
CXCL1P09341 AL133215.2-201ENST00000609242 977 ntBASIC11.23□□□□□ -0.61
CXCL1P09341 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 PSMD2-205ENST00000435761 2574 ntTSL 2 BASIC11.23□□□□□ -0.61
CXCL1P09341 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 KLC4-201ENST00000259708 2688 ntAPPRIS P4 TSL 2 BASIC11.23□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms