Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AC010141.1-201ENST00000411585 623 ntBASIC14.16□□□□□ -0.14
SIX3O95343 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC14.16□□□□□ -0.14
SIX3O95343 GAS5-209ENST00000430245 723 ntTSL 3 BASIC14.16□□□□□ -0.14
SIX3O95343 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC14.16□□□□□ -0.14
SIX3O95343 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC14.16□□□□□ -0.14
SIX3O95343 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
SIX3O95343 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC14.16□□□□□ -0.14
SIX3O95343 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC14.16□□□□□ -0.14
SIX3O95343 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.16□□□□□ -0.14
SIX3O95343 C2orf69P2-201ENST00000562032 1123 ntBASIC14.16□□□□□ -0.14
SIX3O95343 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC14.16□□□□□ -0.14
SIX3O95343 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC14.16□□□□□ -0.14
SIX3O95343 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.16□□□□□ -0.14
SIX3O95343 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC14.16□□□□□ -0.14
SIX3O95343 AC008825.2-201ENST00000603374 718 ntBASIC14.16□□□□□ -0.14
SIX3O95343 ZACNP1-201ENST00000612259 710 ntBASIC14.16□□□□□ -0.14
SIX3O95343 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC14.16□□□□□ -0.14
SIX3O95343 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC14.16□□□□□ -0.14
SIX3O95343 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
SIX3O95343 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC14.16□□□□□ -0.14
SIX3O95343 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC14.16□□□□□ -0.14
SIX3O95343 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC14.16□□□□□ -0.14
SIX3O95343 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC14.16□□□□□ -0.14
SIX3O95343 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
SIX3O95343 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
SIX3O95343 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SIX3O95343 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC14.15□□□□□ -0.14
SIX3O95343 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.15□□□□□ -0.14
SIX3O95343 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC14.15□□□□□ -0.14
SIX3O95343 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.15□□□□□ -0.14
SIX3O95343 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC14.15□□□□□ -0.14
SIX3O95343 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 AC126335.2-201ENST00000623362 4637 ntBASIC14.15□□□□□ -0.14
SIX3O95343 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
SIX3O95343 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC14.15□□□□□ -0.14
SIX3O95343 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
SIX3O95343 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.15□□□□□ -0.14
SIX3O95343 HIST2H2BB-201ENST00000449108 381 ntBASIC14.15□□□□□ -0.14
SIX3O95343 PFN2-215ENST00000497148 743 ntTSL 4 BASIC14.15□□□□□ -0.14
SIX3O95343 AHRR-211ENST00000515206 462 ntTSL 5 BASIC14.15□□□□□ -0.14
SIX3O95343 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC14.15□□□□□ -0.14
SIX3O95343 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.15□□□□□ -0.14
SIX3O95343 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
SIX3O95343 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.15□□□□□ -0.14
SIX3O95343 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC14.15□□□□□ -0.14
SIX3O95343 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 AC005014.1-201ENST00000432006 2976 ntBASIC14.15□□□□□ -0.14
SIX3O95343 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
SIX3O95343 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 E2F3P2-201ENST00000447755 1422 ntBASIC14.15□□□□□ -0.14
SIX3O95343 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
SIX3O95343 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
SIX3O95343 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SIX3O95343 CU639417.3-201ENST00000624240 1404 ntBASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms