Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 TMBIM7P-202ENST00000641474 1516 ntBASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 AC018629.1-201ENST00000623381 1736 ntBASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 LBH-202ENST00000401506 485 ntTSL 3 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 XBP1P1-201ENST00000436573 652 ntBASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 NAT9-220ENST00000582870 896 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 WDR7-208ENST00000589935 544 ntTSL 4 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 LINC01783-202ENST00000614408 828 ntBASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 AP003419.4-201ENST00000616071 517 ntBASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 BX284668.2-205ENST00000619677 828 ntBASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC3Q9BQI4 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
CCDC3Q9BQI4 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 AC015909.3-201ENST00000572855 1794 ntBASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 AC104784.1-201ENST00000473096 294 ntBASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 AC011491.1-203ENST00000637688 543 ntBASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 LINC01165-201ENST00000445190 1623 ntBASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms