Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC14.48□□□□□ -0.09
VCANP13611 AP000439.2-201ENST00000542064 726 ntTSL 2 BASIC14.48□□□□□ -0.09
VCANP13611 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
VCANP13611 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
VCANP13611 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC14.48□□□□□ -0.09
VCANP13611 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VCANP13611 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VCANP13611 GOSR2-209ENST00000575949 1444 ntTSL 2 BASIC14.47□□□□□ -0.09
VCANP13611 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.47□□□□□ -0.09
VCANP13611 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VCANP13611 TIMM10-201ENST00000257245 680 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VCANP13611 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VCANP13611 AC145285.5-201ENST00000562217 361 ntBASIC14.47□□□□□ -0.09
VCANP13611 BMS1P8-203ENST00000567036 614 ntTSL 3 BASIC14.47□□□□□ -0.09
VCANP13611 LINC02228-204ENST00000642115 2962 ntBASIC14.47□□□□□ -0.09
VCANP13611 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.47□□□□□ -0.09
VCANP13611 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VCANP13611 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
VCANP13611 KRTAP10-4-201ENST00000400374 1643 ntAPPRIS P2 BASIC14.47□□□□□ -0.09
VCANP13611 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VCANP13611 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VCANP13611 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.47□□□□□ -0.09
VCANP13611 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VCANP13611 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VCANP13611 BTF3-202ENST00000380591 1237 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VCANP13611 C3orf84-203ENST00000545770 706 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
VCANP13611 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
VCANP13611 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VCANP13611 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VCANP13611 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.47□□□□□ -0.09
VCANP13611 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VCANP13611 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
VCANP13611 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC14.47□□□□□ -0.09
VCANP13611 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
VCANP13611 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC14.47□□□□□ -0.09
VCANP13611 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VCANP13611 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VCANP13611 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VCANP13611 AC253536.1-201ENST00000437021 315 ntBASIC14.47□□□□□ -0.09
VCANP13611 AC139143.1-201ENST00000441772 1207 ntBASIC14.47□□□□□ -0.09
VCANP13611 AC007622.1-201ENST00000488371 535 ntBASIC14.47□□□□□ -0.09
VCANP13611 AC138150.1-201ENST00000589950 570 ntTSL 4 BASIC14.47□□□□□ -0.09
VCANP13611 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC14.46□□□□□ -0.09
VCANP13611 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
VCANP13611 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC14.46□□□□□ -0.09
VCANP13611 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VCANP13611 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VCANP13611 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
VCANP13611 SSR4-202ENST00000370085 526 ntTSL 2 BASIC14.46□□□□□ -0.09
VCANP13611 MIR766-201ENST00000390223 111 ntBASIC14.46□□□□□ -0.09
VCANP13611 Z84721.1-201ENST00000438841 372 ntBASIC14.46□□□□□ -0.09
VCANP13611 NDUFB10P1-201ENST00000567319 521 ntBASIC14.46□□□□□ -0.09
VCANP13611 AC109597.2-201ENST00000569407 927 ntTSL 3 BASIC14.46□□□□□ -0.09
VCANP13611 MIR7704-201ENST00000610524 59 ntBASIC14.46□□□□□ -0.09
VCANP13611 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC14.46□□□□□ -0.09
VCANP13611 LINC01615-203ENST00000634877 673 ntTSL 5 BASIC14.46□□□□□ -0.09
VCANP13611 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
VCANP13611 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.46□□□□□ -0.09
VCANP13611 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VCANP13611 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
VCANP13611 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
VCANP13611 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
VCANP13611 CST2-201ENST00000304725 748 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
VCANP13611 MRPL45P2-201ENST00000425159 927 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
VCANP13611 AL589666.1-201ENST00000503906 835 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
VCANP13611 AC007610.1-201ENST00000568130 498 ntTSL 3 BASIC14.46□□□□□ -0.1
VCANP13611 AL031768.1-201ENST00000606542 701 ntBASIC14.46□□□□□ -0.1
VCANP13611 PIGA-209ENST00000634582 965 ntTSL 2 BASIC14.46□□□□□ -0.1
VCANP13611 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
VCANP13611 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
VCANP13611 AC018529.2-202ENST00000611482 3087 ntBASIC14.46□□□□□ -0.1
VCANP13611 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
VCANP13611 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.1
VCANP13611 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC14.46□□□□□ -0.1
VCANP13611 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.45□□□□□ -0.1
VCANP13611 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
VCANP13611 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VCANP13611 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
VCANP13611 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VCANP13611 AL356289.1-203ENST00000439795 789 ntTSL 5 BASIC14.45□□□□□ -0.1
VCANP13611 AC105446.1-201ENST00000441882 407 ntTSL 3 BASIC14.45□□□□□ -0.1
VCANP13611 KRT19P4-201ENST00000443208 943 ntBASIC14.45□□□□□ -0.1
VCANP13611 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC14.45□□□□□ -0.1
VCANP13611 AL161727.1-201ENST00000457409 530 ntBASIC14.45□□□□□ -0.1
VCANP13611 SRPK2P-201ENST00000523408 1100 ntBASIC14.45□□□□□ -0.1
VCANP13611 AP005264.5-201ENST00000590066 467 ntBASIC14.45□□□□□ -0.1
VCANP13611 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
VCANP13611 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VCANP13611 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VCANP13611 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VCANP13611 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VCANP13611 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VCANP13611 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VCANP13611 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.45□□□□□ -0.1
VCANP13611 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
VCANP13611 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
VCANP13611 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
VCANP13611 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VCANP13611 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC14.45□□□□□ -0.1
VCANP13611 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms