Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 HNRNPA1P32-201ENST00000396326 963 ntBASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 PFN1P12-201ENST00000455938 534 ntBASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 AC106794.1-201ENST00000506935 792 ntBASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 AC140658.4-201ENST00000561990 352 ntBASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 USP39-207ENST00000450066 2086 ntTSL 2 BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
BLOC1S4Q9NUP1 AC089987.1-201ENST00000551654 2209 ntBASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 LINC00115-201ENST00000473798 1317 ntBASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 MAX-218ENST00000557746 571 ntTSL 4 BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 MIR3615-201ENST00000581999 87 ntBASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 AL136295.7-201ENST00000619226 1200 ntBASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 MIR6869-201ENST00000619434 62 ntBASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC16■□□□□ 0.15
BLOC1S4Q9NUP1 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 GOLGA8EP-201ENST00000530246 1959 ntBASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 AC007274.1-201ENST00000439805 662 ntBASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 AC006033.1-201ENST00000440505 426 ntBASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC15.99■□□□□ 0.15
BLOC1S4Q9NUP1 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms