Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC14.22□□□□□ -0.13
PCNAP12004 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.22□□□□□ -0.13
PCNAP12004 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC14.22□□□□□ -0.13
PCNAP12004 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.22□□□□□ -0.13
PCNAP12004 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
PCNAP12004 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC14.22□□□□□ -0.13
PCNAP12004 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
PCNAP12004 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
PCNAP12004 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC14.22□□□□□ -0.13
PCNAP12004 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
PCNAP12004 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC14.22□□□□□ -0.13
PCNAP12004 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
PCNAP12004 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
PCNAP12004 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.22□□□□□ -0.13
PCNAP12004 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PCNAP12004 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.22□□□□□ -0.13
PCNAP12004 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
PCNAP12004 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
PCNAP12004 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
PCNAP12004 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.21□□□□□ -0.13
PCNAP12004 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.21□□□□□ -0.13
PCNAP12004 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
PCNAP12004 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
PCNAP12004 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.13
PCNAP12004 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
PCNAP12004 COL6A4P2-202ENST00000504443 2753 ntBASIC14.21□□□□□ -0.13
PCNAP12004 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC14.21□□□□□ -0.13
PCNAP12004 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
PCNAP12004 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
PCNAP12004 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC14.21□□□□□ -0.13
PCNAP12004 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.21□□□□□ -0.13
PCNAP12004 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.21□□□□□ -0.13
PCNAP12004 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
PCNAP12004 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC14.21□□□□□ -0.13
PCNAP12004 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
PCNAP12004 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14.21□□□□□ -0.13
PCNAP12004 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC14.21□□□□□ -0.13
PCNAP12004 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC14.21□□□□□ -0.13
PCNAP12004 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC14.21□□□□□ -0.13
PCNAP12004 MIR4683-201ENST00000579659 81 ntBASIC14.21□□□□□ -0.13
PCNAP12004 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
PCNAP12004 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
PCNAP12004 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC14.21□□□□□ -0.13
PCNAP12004 LINC02084-201ENST00000606069 1096 ntBASIC14.21□□□□□ -0.13
PCNAP12004 AC012645.4-201ENST00000610691 1061 ntBASIC14.21□□□□□ -0.13
PCNAP12004 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 AC002472.3-201ENST00000640124 621 ntBASIC14.21□□□□□ -0.13
PCNAP12004 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC14.21□□□□□ -0.13
PCNAP12004 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
PCNAP12004 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.21□□□□□ -0.13
PCNAP12004 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PCNAP12004 AC012617.1-204ENST00000586340 2305 ntBASIC14.21□□□□□ -0.13
PCNAP12004 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
PCNAP12004 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
PCNAP12004 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
PCNAP12004 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
PCNAP12004 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
PCNAP12004 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
PCNAP12004 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC14.21□□□□□ -0.14
PCNAP12004 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
PCNAP12004 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.21□□□□□ -0.14
PCNAP12004 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms