Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 NLGN3-206ENST00000612180 3319 ntTSL 5 BASIC14.5□□□□□ -0.09
SHOX2O60902 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.5□□□□□ -0.09
SHOX2O60902 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 DPY19L2P2-205ENST00000439473 3994 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 EFHD1-203ENST00000409708 1817 ntTSL 2 BASIC14.5□□□□□ -0.09
SHOX2O60902 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 PARP10-205ENST00000525773 3404 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
SHOX2O60902 GALNT15-203ENST00000437509 2416 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 ITFG2-201ENST00000228799 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
SHOX2O60902 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 ALG8-202ENST00000376156 1677 ntTSL 2 BASIC14.49□□□□□ -0.09
SHOX2O60902 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 GUCY1B3-202ENST00000502959 2255 ntTSL 2 BASIC14.49□□□□□ -0.09
SHOX2O60902 ELN-234ENST00000621115 3452 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
SHOX2O60902 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.49□□□□□ -0.09
SHOX2O60902 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 AL645937.6-201ENST00000641122 3727 ntBASIC14.49□□□□□ -0.09
SHOX2O60902 PGBD1-201ENST00000259883 3100 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 TBX4-202ENST00000393853 3398 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
SHOX2O60902 RGS16-201ENST00000367558 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC14.49□□□□□ -0.09
SHOX2O60902 GATB-205ENST00000508611 605 ntTSL 2 BASIC14.49□□□□□ -0.09
SHOX2O60902 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.49□□□□□ -0.09
SHOX2O60902 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.49□□□□□ -0.09
SHOX2O60902 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC14.49□□□□□ -0.09
SHOX2O60902 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.49□□□□□ -0.09
SHOX2O60902 RN7SL828P-201ENST00000607615 303 ntBASIC14.49□□□□□ -0.09
SHOX2O60902 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC14.49□□□□□ -0.09
SHOX2O60902 CEACAM20-203ENST00000614924 1809 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 MDH2-203ENST00000432020 1548 ntTSL 2 BASIC14.49□□□□□ -0.09
SHOX2O60902 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.49□□□□□ -0.09
SHOX2O60902 SH2D5-201ENST00000375031 3705 ntTSL 2 BASIC14.49□□□□□ -0.09
SHOX2O60902 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 POMT1-203ENST00000372228 3123 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 PPP1R12B-214ENST00000491336 2046 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
SHOX2O60902 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.49□□□□□ -0.09
SHOX2O60902 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 AC010547.1-201ENST00000500612 2793 ntTSL 2 BASIC14.49□□□□□ -0.09
SHOX2O60902 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
SHOX2O60902 TXNDC17-201ENST00000250101 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 RBPJ-203ENST00000345843 1682 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
SHOX2O60902 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
SHOX2O60902 FOXN3-219ENST00000615335 2421 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
SHOX2O60902 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHOX2O60902 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SHOX2O60902 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
SHOX2O60902 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SHOX2O60902 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
SHOX2O60902 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
SHOX2O60902 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
SHOX2O60902 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SHOX2O60902 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHOX2O60902 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHOX2O60902 AC126564.1-201ENST00000623628 2013 ntBASIC14.48□□□□□ -0.09
SHOX2O60902 PES1-205ENST00000405677 2708 ntTSL 2 BASIC14.48□□□□□ -0.09
SHOX2O60902 NRF1-202ENST00000311967 2481 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SHOX2O60902 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC14.48□□□□□ -0.09
SHOX2O60902 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
SHOX2O60902 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHOX2O60902 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHOX2O60902 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC14.48□□□□□ -0.09
SHOX2O60902 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.48□□□□□ -0.09
SHOX2O60902 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC14.48□□□□□ -0.09
SHOX2O60902 POLD2P1-201ENST00000511220 997 ntBASIC14.48□□□□□ -0.09
SHOX2O60902 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC14.48□□□□□ -0.09
SHOX2O60902 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC14.48□□□□□ -0.09
SHOX2O60902 AC105339.1-204ENST00000636249 355 ntBASIC14.48□□□□□ -0.09
SHOX2O60902 PRSS30P-206ENST00000641773 873 ntBASIC14.48□□□□□ -0.09
SHOX2O60902 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHOX2O60902 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHOX2O60902 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
SHOX2O60902 AC025183.3-201ENST00000623526 1482 ntBASIC14.48□□□□□ -0.09
SHOX2O60902 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SHOX2O60902 CACNB1-202ENST00000394303 3742 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHOX2O60902 SH2D7-201ENST00000328828 2750 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
SHOX2O60902 KCNK10-202ENST00000319231 2725 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHOX2O60902 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHOX2O60902 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHOX2O60902 FAM53B-203ENST00000392754 3557 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
SHOX2O60902 PLOD2-209ENST00000494950 2908 ntTSL 2 BASIC14.48□□□□□ -0.09
SHOX2O60902 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.48□□□□□ -0.09
SHOX2O60902 SYNJ2-208ENST00000640338 3959 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
SHOX2O60902 MEX3B-202ENST00000558133 4333 ntBASIC14.47□□□□□ -0.09
SHOX2O60902 NMRAL2P-204ENST00000423298 1792 ntTSL 5 BASIC14.47□□□□□ -0.09
SHOX2O60902 AC092902.2-210ENST00000468859 1996 ntTSL 2 BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms