Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 Z69733.1-201ENST00000445990 632 ntTSL 3 BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 AC005777.1-201ENST00000588332 187 ntBASIC13.89□□□□□ -0.19
VPS13AQ96RL7 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 SERHL2-201ENST00000327678 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 AC015688.4-201ENST00000580780 1647 ntBASIC13.89□□□□□ -0.19
VPS13AQ96RL7 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 AC064801.2-201ENST00000625052 1303 ntBASIC13.88□□□□□ -0.19
VPS13AQ96RL7 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 EGLN3-205ENST00000547327 2849 ntBASIC13.88□□□□□ -0.19
VPS13AQ96RL7 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 S100A7A-202ENST00000368728 440 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 RPL38-202ENST00000439590 431 ntAPPRIS P2 TSL 2 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 AC139100.2-201ENST00000616901 662 ntBASIC13.88□□□□□ -0.19
VPS13AQ96RL7 BX322562.1-201ENST00000617004 561 ntBASIC13.88□□□□□ -0.19
VPS13AQ96RL7 PAX6-238ENST00000638755 1161 ntTSL 5 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 FTHL17-201ENST00000359202 813 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 BX679664.3-201ENST00000414070 555 ntBASIC13.88□□□□□ -0.19
VPS13AQ96RL7 AC090696.1-201ENST00000419100 418 ntTSL 3 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 AC113935.1-201ENST00000471722 555 ntBASIC13.88□□□□□ -0.19
VPS13AQ96RL7 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 AC073896.3-201ENST00000546789 437 ntTSL 5 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 AC015922.3-201ENST00000582780 347 ntTSL 3 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 PPT1-215ENST00000641471 2368 ntBASIC13.88□□□□□ -0.19
VPS13AQ96RL7 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 KRT8P38-201ENST00000441370 1430 ntBASIC13.88□□□□□ -0.19
VPS13AQ96RL7 AC092115.1-201ENST00000566277 1402 ntBASIC13.88□□□□□ -0.19
VPS13AQ96RL7 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 MYB-242ENST00000618728 3545 ntTSL 5 BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS13AQ96RL7 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 PRDX2-202ENST00000334482 784 ntTSL 3 BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 AL357033.2-201ENST00000430184 739 ntTSL 3 BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 GOLGA2P8-201ENST00000505201 779 ntBASIC13.87□□□□□ -0.19
VPS13AQ96RL7 ABCD1P3-201ENST00000562927 605 ntBASIC13.87□□□□□ -0.19
VPS13AQ96RL7 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 USE1-207ENST00000596136 637 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 RPS5-205ENST00000598495 800 ntTSL 3 BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 PLA2G4C-AS1-203ENST00000601950 454 ntTSL 3 BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 AL513477.1-201ENST00000602865 2407 ntBASIC13.87□□□□□ -0.19
VPS13AQ96RL7 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 AC012617.1-204ENST00000586340 2305 ntBASIC13.87□□□□□ -0.19
VPS13AQ96RL7 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 TEX38-201ENST00000334122 866 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 NANOS3-201ENST00000339133 581 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 SOD1-202ENST00000389995 865 ntTSL 3 BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 TPT1P9-201ENST00000413759 514 ntBASIC13.87□□□□□ -0.19
VPS13AQ96RL7 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 MVK-217ENST00000639206 367 ntTSL 5 BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 ADCK1-201ENST00000238561 2234 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms