Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SOX2P48431 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC12.86□□□□□ -0.35
SOX2P48431 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SOX2P48431 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SOX2P48431 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
SOX2P48431 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SOX2P48431 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
SOX2P48431 APOA1-205ENST00000375329 927 ntTSL 2 BASIC12.86□□□□□ -0.35
SOX2P48431 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
SOX2P48431 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
SOX2P48431 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
SOX2P48431 MIR1233-2-201ENST00000408138 82 ntBASIC12.86□□□□□ -0.35
SOX2P48431 MIR1233-1-201ENST00000408722 82 ntBASIC12.86□□□□□ -0.35
SOX2P48431 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
SOX2P48431 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.35
SOX2P48431 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC12.86□□□□□ -0.35
SOX2P48431 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
SOX2P48431 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC12.86□□□□□ -0.35
SOX2P48431 AC008761.3-201ENST00000624803 892 ntBASIC12.86□□□□□ -0.35
SOX2P48431 AL603764.1-201ENST00000636452 321 ntBASIC12.86□□□□□ -0.35
SOX2P48431 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC12.86□□□□□ -0.35
SOX2P48431 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SOX2P48431 AC072061.1-201ENST00000569710 2234 ntBASIC12.86□□□□□ -0.35
SOX2P48431 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC12.86□□□□□ -0.35
SOX2P48431 BDKRB2-202ENST00000542454 6845 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
SOX2P48431 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SOX2P48431 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
SOX2P48431 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
SOX2P48431 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
SOX2P48431 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SOX2P48431 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
SOX2P48431 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC12.86□□□□□ -0.35
SOX2P48431 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
SOX2P48431 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC12.86□□□□□ -0.35
SOX2P48431 AL138725.1-201ENST00000407347 1314 ntBASIC12.86□□□□□ -0.35
SOX2P48431 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SOX2P48431 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC12.86□□□□□ -0.35
SOX2P48431 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC12.85□□□□□ -0.35
SOX2P48431 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC12.85□□□□□ -0.35
SOX2P48431 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC12.85□□□□□ -0.35
SOX2P48431 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC12.85□□□□□ -0.35
SOX2P48431 AL359183.1-201ENST00000623796 2132 ntBASIC12.85□□□□□ -0.35
SOX2P48431 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
SOX2P48431 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
SOX2P48431 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
SOX2P48431 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 VMA21-202ENST00000370361 693 ntTSL 5 BASIC12.85□□□□□ -0.35
SOX2P48431 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
SOX2P48431 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC12.85□□□□□ -0.35
SOX2P48431 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC12.85□□□□□ -0.35
SOX2P48431 SOCS2P1-201ENST00000417727 557 ntBASIC12.85□□□□□ -0.35
SOX2P48431 MEP1AP4-201ENST00000423244 1087 ntBASIC12.85□□□□□ -0.35
SOX2P48431 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC12.85□□□□□ -0.35
SOX2P48431 AC055876.3-201ENST00000431496 288 ntBASIC12.85□□□□□ -0.35
SOX2P48431 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC12.85□□□□□ -0.35
SOX2P48431 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC12.85□□□□□ -0.35
SOX2P48431 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC12.85□□□□□ -0.35
SOX2P48431 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC12.85□□□□□ -0.35
SOX2P48431 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC12.85□□□□□ -0.35
SOX2P48431 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC12.85□□□□□ -0.35
SOX2P48431 AL359711.2-201ENST00000563105 872 ntBASIC12.85□□□□□ -0.35
SOX2P48431 AC124283.3-201ENST00000570869 594 ntBASIC12.85□□□□□ -0.35
SOX2P48431 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC12.85□□□□□ -0.35
SOX2P48431 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC12.85□□□□□ -0.35
SOX2P48431 AC138649.4-201ENST00000612222 287 ntBASIC12.85□□□□□ -0.35
SOX2P48431 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC12.85□□□□□ -0.35
SOX2P48431 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
SOX2P48431 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
SOX2P48431 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC12.85□□□□□ -0.35
SOX2P48431 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC12.85□□□□□ -0.35
SOX2P48431 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 FOS-202ENST00000535987 1402 ntTSL 2 BASIC12.85□□□□□ -0.35
SOX2P48431 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC12.85□□□□□ -0.35
SOX2P48431 KRT8P35-201ENST00000483942 1338 ntBASIC12.85□□□□□ -0.35
SOX2P48431 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC12.85□□□□□ -0.35
SOX2P48431 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
SOX2P48431 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
SOX2P48431 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC12.84□□□□□ -0.35
SOX2P48431 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
SOX2P48431 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms