Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SMIM4-201ENST00000307106 274 ntTSL 2 BASIC16.9■□□□□ 0.3
BRCA1P38398 SLC35A2-203ENST00000376515 1044 ntTSL 3 BASIC16.9■□□□□ 0.3
BRCA1P38398 HYKK-201ENST00000388988 1235 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
BRCA1P38398 IGHV3-66-201ENST00000390632 427 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
BRCA1P38398 RBMXP1-201ENST00000408004 1191 ntBASIC16.9■□□□□ 0.3
BRCA1P38398 AC091729.3-203ENST00000413706 674 ntTSL 5 BASIC16.9■□□□□ 0.3
BRCA1P38398 SRP9P1-201ENST00000445874 261 ntBASIC16.9■□□□□ 0.3
BRCA1P38398 PRSS46-201ENST00000463091 982 ntAPPRIS P1 TSL 4 BASIC16.9■□□□□ 0.3
BRCA1P38398 LINC00643-202ENST00000553426 526 ntTSL 3 BASIC16.9■□□□□ 0.3
BRCA1P38398 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC16.9■□□□□ 0.3
BRCA1P38398 AL353581.1-201ENST00000606916 1224 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
BRCA1P38398 TRPC5OS-203ENST00000635763 955 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
BRCA1P38398 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
BRCA1P38398 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
BRCA1P38398 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
BRCA1P38398 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
BRCA1P38398 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
BRCA1P38398 AL118508.1-201ENST00000613502 2345 ntBASIC16.9■□□□□ 0.3
BRCA1P38398 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.9■□□□□ 0.3
BRCA1P38398 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.9■□□□□ 0.3
BRCA1P38398 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
BRCA1P38398 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
BRCA1P38398 TPM3-204ENST00000323144 1088 ntTSL 2 BASIC16.9■□□□□ 0.3
BRCA1P38398 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
BRCA1P38398 C3orf84-201ENST00000432035 669 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
BRCA1P38398 AL450346.2-201ENST00000495602 1024 ntBASIC16.9■□□□□ 0.3
BRCA1P38398 IGHVII-74-1-201ENST00000517572 241 ntBASIC16.9■□□□□ 0.3
BRCA1P38398 AC103724.2-201ENST00000520355 476 ntBASIC16.9■□□□□ 0.3
BRCA1P38398 AC010183.1-201ENST00000552413 559 ntTSL 4 BASIC16.9■□□□□ 0.3
BRCA1P38398 AC003070.1-201ENST00000592389 457 ntTSL 2 BASIC16.9■□□□□ 0.3
BRCA1P38398 TUBB4A-207ENST00000596926 548 ntTSL 4 BASIC16.9■□□□□ 0.3
BRCA1P38398 ITGB2-AS1-204ENST00000609592 482 ntTSL 5 BASIC16.9■□□□□ 0.3
BRCA1P38398 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC16.9■□□□□ 0.3
BRCA1P38398 AL139424.3-202ENST00000641619 917 ntBASIC16.9■□□□□ 0.3
BRCA1P38398 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC16.9■□□□□ 0.3
BRCA1P38398 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
BRCA1P38398 ZEB1-AS1-208ENST00000607166 2503 ntBASIC16.9■□□□□ 0.3
BRCA1P38398 CTSD-208ENST00000636843 1512 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
BRCA1P38398 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
BRCA1P38398 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
BRCA1P38398 AC106785.2-201ENST00000564385 1319 ntBASIC16.9■□□□□ 0.3
BRCA1P38398 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC16.89■□□□□ 0.3
BRCA1P38398 GSN-209ENST00000449733 2702 ntTSL 2 BASIC16.89■□□□□ 0.3
BRCA1P38398 GNG4-201ENST00000366597 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
BRCA1P38398 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.89■□□□□ 0.29
BRCA1P38398 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
BRCA1P38398 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
BRCA1P38398 AGAP7P-201ENST00000582299 2062 ntBASIC16.89■□□□□ 0.29
BRCA1P38398 AGAP14-201ENST00000624701 2060 ntBASIC16.89■□□□□ 0.29
BRCA1P38398 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
BRCA1P38398 AC097474.1-201ENST00000506481 1371 ntBASIC16.89■□□□□ 0.29
BRCA1P38398 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
BRCA1P38398 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
BRCA1P38398 GTF2A1L-201ENST00000403751 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
BRCA1P38398 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
BRCA1P38398 IQCF4-203ENST00000428561 420 ntBASIC16.89■□□□□ 0.29
BRCA1P38398 HNRNPA1P73-201ENST00000446472 928 ntBASIC16.89■□□□□ 0.29
BRCA1P38398 PSMB8-AS1-206ENST00000458296 958 ntTSL 3 BASIC16.89■□□□□ 0.29
BRCA1P38398 TRBV11-2-201ENST00000471935 408 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
BRCA1P38398 AC008750.2-201ENST00000526996 627 ntTSL 3 BASIC16.89■□□□□ 0.29
BRCA1P38398 MSRB1-205ENST00000564908 550 ntTSL 3 BASIC16.89■□□□□ 0.29
BRCA1P38398 AC015922.3-201ENST00000582780 347 ntTSL 3 BASIC16.89■□□□□ 0.29
BRCA1P38398 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
BRCA1P38398 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
BRCA1P38398 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
BRCA1P38398 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
BRCA1P38398 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
BRCA1P38398 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC16.89■□□□□ 0.29
BRCA1P38398 SNRPN-205ENST00000400100 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
BRCA1P38398 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
BRCA1P38398 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC16.89■□□□□ 0.29
BRCA1P38398 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.88■□□□□ 0.29
BRCA1P38398 OR2T27-201ENST00000344889 954 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
BRCA1P38398 TXLNGY-202ENST00000407724 1000 ntTSL 3 BASIC16.88■□□□□ 0.29
BRCA1P38398 AC004923.1-201ENST00000527543 776 ntTSL 5 BASIC16.88■□□□□ 0.29
BRCA1P38398 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC16.88■□□□□ 0.29
BRCA1P38398 AC048380.1-201ENST00000589818 465 ntTSL 3 BASIC16.88■□□□□ 0.29
BRCA1P38398 AC138150.1-201ENST00000589950 570 ntTSL 4 BASIC16.88■□□□□ 0.29
BRCA1P38398 FXYD4-204ENST00000616495 778 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
BRCA1P38398 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC16.88■□□□□ 0.29
BRCA1P38398 BX510359.7-201ENST00000619819 630 ntBASIC16.88■□□□□ 0.29
BRCA1P38398 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.88■□□□□ 0.29
BRCA1P38398 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
BRCA1P38398 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
BRCA1P38398 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC16.88■□□□□ 0.29
BRCA1P38398 LINC01658-201ENST00000320372 1578 ntTSL 2 BASIC16.88■□□□□ 0.29
BRCA1P38398 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
BRCA1P38398 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.88■□□□□ 0.29
BRCA1P38398 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
BRCA1P38398 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC16.88■□□□□ 0.29
BRCA1P38398 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
BRCA1P38398 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
BRCA1P38398 PCP2-201ENST00000311069 776 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
BRCA1P38398 AL031577.1-201ENST00000339867 399 ntBASIC16.88■□□□□ 0.29
BRCA1P38398 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
BRCA1P38398 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
BRCA1P38398 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
BRCA1P38398 CYCS-203ENST00000409764 799 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
BRCA1P38398 LINC01833-204ENST00000444871 581 ntTSL 3 BASIC16.88■□□□□ 0.29
BRCA1P38398 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms