Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
TM9SF3Q9HD45 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
TM9SF3Q9HD45 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
TM9SF3Q9HD45 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
TM9SF3Q9HD45 PTCHD3P2-201ENST00000424937 1205 ntBASIC22.68■■□□□ 1.22
TM9SF3Q9HD45 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
TM9SF3Q9HD45 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC22.68■■□□□ 1.22
TM9SF3Q9HD45 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
TM9SF3Q9HD45 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
TM9SF3Q9HD45 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
TM9SF3Q9HD45 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC22.67■■□□□ 1.22
TM9SF3Q9HD45 RBM38-205ENST00000440234 686 ntTSL 2 BASIC22.67■■□□□ 1.22
TM9SF3Q9HD45 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
TM9SF3Q9HD45 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC22.66■■□□□ 1.22
TM9SF3Q9HD45 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
TM9SF3Q9HD45 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
TM9SF3Q9HD45 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
TM9SF3Q9HD45 AC142381.3-201ENST00000568208 1670 ntBASIC22.66■■□□□ 1.22
TM9SF3Q9HD45 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
TM9SF3Q9HD45 MAG-206ENST00000597035 542 ntTSL 4 BASIC22.66■■□□□ 1.22
TM9SF3Q9HD45 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC22.66■■□□□ 1.22
TM9SF3Q9HD45 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC22.65■■□□□ 1.22
TM9SF3Q9HD45 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
TM9SF3Q9HD45 CA15P2-201ENST00000611168 834 ntBASIC22.65■■□□□ 1.22
TM9SF3Q9HD45 AC011298.3-201ENST00000615796 283 ntBASIC22.65■■□□□ 1.22
TM9SF3Q9HD45 RASA4CP-201ENST00000424092 1398 ntBASIC22.64■■□□□ 1.22
TM9SF3Q9HD45 AL138724.1-201ENST00000606771 1088 ntBASIC22.64■■□□□ 1.21
TM9SF3Q9HD45 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
TM9SF3Q9HD45 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
TM9SF3Q9HD45 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TM9SF3Q9HD45 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
TM9SF3Q9HD45 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
TM9SF3Q9HD45 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TM9SF3Q9HD45 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC22.63■■□□□ 1.21
TM9SF3Q9HD45 LSR-205ENST00000427250 1606 ntTSL 2 BASIC22.63■■□□□ 1.21
TM9SF3Q9HD45 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC22.63■■□□□ 1.21
TM9SF3Q9HD45 LTK-203ENST00000453182 2412 ntTSL 2 BASIC22.62■■□□□ 1.21
TM9SF3Q9HD45 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
TM9SF3Q9HD45 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
TM9SF3Q9HD45 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
TM9SF3Q9HD45 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC22.62■■□□□ 1.21
TM9SF3Q9HD45 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC22.62■■□□□ 1.21
TM9SF3Q9HD45 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC22.62■■□□□ 1.21
TM9SF3Q9HD45 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC22.62■■□□□ 1.21
TM9SF3Q9HD45 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC22.62■■□□□ 1.21
TM9SF3Q9HD45 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC22.62■■□□□ 1.21
TM9SF3Q9HD45 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC22.62■■□□□ 1.21
TM9SF3Q9HD45 AC027682.1-201ENST00000562846 899 ntBASIC22.62■■□□□ 1.21
TM9SF3Q9HD45 AC104564.3-201ENST00000582367 638 ntBASIC22.62■■□□□ 1.21
TM9SF3Q9HD45 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC22.62■■□□□ 1.21
TM9SF3Q9HD45 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
TM9SF3Q9HD45 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
TM9SF3Q9HD45 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
TM9SF3Q9HD45 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
TM9SF3Q9HD45 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
TM9SF3Q9HD45 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
TM9SF3Q9HD45 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
TM9SF3Q9HD45 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
TM9SF3Q9HD45 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC22.61■■□□□ 1.21
TM9SF3Q9HD45 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
TM9SF3Q9HD45 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
TM9SF3Q9HD45 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
TM9SF3Q9HD45 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
TM9SF3Q9HD45 C17orf82-201ENST00000623772 1530 ntBASIC22.61■■□□□ 1.21
TM9SF3Q9HD45 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
TM9SF3Q9HD45 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TM9SF3Q9HD45 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TM9SF3Q9HD45 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
TM9SF3Q9HD45 AC008764.7-201ENST00000593779 1081 ntBASIC22.6■■□□□ 1.21
TM9SF3Q9HD45 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC22.6■■□□□ 1.21
TM9SF3Q9HD45 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC22.6■■□□□ 1.21
TM9SF3Q9HD45 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
TM9SF3Q9HD45 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TM9SF3Q9HD45 MED17-227ENST00000640521 2047 ntTSL 5 BASIC22.6■■□□□ 1.21
TM9SF3Q9HD45 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TM9SF3Q9HD45 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
TM9SF3Q9HD45 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
TM9SF3Q9HD45 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC22.59■■□□□ 1.21
TM9SF3Q9HD45 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
TM9SF3Q9HD45 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
TM9SF3Q9HD45 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC22.59■■□□□ 1.21
TM9SF3Q9HD45 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC22.59■■□□□ 1.21
TM9SF3Q9HD45 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC22.59■■□□□ 1.21
TM9SF3Q9HD45 MIR6821-201ENST00000617625 74 ntBASIC22.59■■□□□ 1.21
TM9SF3Q9HD45 AC241377.3-202ENST00000626088 1088 ntBASIC22.59■■□□□ 1.21
TM9SF3Q9HD45 AC241585.3-202ENST00000628937 1088 ntBASIC22.59■■□□□ 1.21
TM9SF3Q9HD45 AC245100.8-202ENST00000629247 1058 ntBASIC22.59■■□□□ 1.21
TM9SF3Q9HD45 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
TM9SF3Q9HD45 THRA-202ENST00000394121 2260 ntTSL 2 BASIC22.58■■□□□ 1.21
TM9SF3Q9HD45 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
TM9SF3Q9HD45 HES6-206ENST00000409574 738 ntTSL 2 BASIC22.58■■□□□ 1.21
TM9SF3Q9HD45 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
TM9SF3Q9HD45 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
TM9SF3Q9HD45 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
TM9SF3Q9HD45 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.2
TM9SF3Q9HD45 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC22.57■■□□□ 1.2
TM9SF3Q9HD45 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC22.57■■□□□ 1.2
TM9SF3Q9HD45 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
TM9SF3Q9HD45 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TM9SF3Q9HD45 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC22.57■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms