Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC29.73■■■□□ 2.35
RTF1Q92541 AC024257.2-201ENST00000549699 147 ntBASIC29.73■■■□□ 2.35
RTF1Q92541 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC29.73■■■□□ 2.35
RTF1Q92541 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC29.73■■■□□ 2.35
RTF1Q92541 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
RTF1Q92541 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC29.72■■■□□ 2.35
RTF1Q92541 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
RTF1Q92541 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC29.72■■■□□ 2.35
RTF1Q92541 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC29.72■■■□□ 2.35
RTF1Q92541 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC29.72■■■□□ 2.35
RTF1Q92541 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
RTF1Q92541 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC29.72■■■□□ 2.35
RTF1Q92541 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC29.71■■■□□ 2.35
RTF1Q92541 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC29.71■■■□□ 2.35
RTF1Q92541 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
RTF1Q92541 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC29.71■■■□□ 2.35
RTF1Q92541 SF1-220ENST00000626028 704 ntTSL 2 BASIC29.71■■■□□ 2.35
RTF1Q92541 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
RTF1Q92541 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
RTF1Q92541 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
RTF1Q92541 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
RTF1Q92541 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC29.7■■■□□ 2.35
RTF1Q92541 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
RTF1Q92541 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
RTF1Q92541 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
RTF1Q92541 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC29.69■■■□□ 2.34
RTF1Q92541 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC29.69■■■□□ 2.34
RTF1Q92541 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
RTF1Q92541 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
RTF1Q92541 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
RTF1Q92541 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
RTF1Q92541 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
RTF1Q92541 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC29.68■■■□□ 2.34
RTF1Q92541 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC29.68■■■□□ 2.34
RTF1Q92541 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC29.68■■■□□ 2.34
RTF1Q92541 AC241377.3-202ENST00000626088 1088 ntBASIC29.68■■■□□ 2.34
RTF1Q92541 AC241585.3-202ENST00000628937 1088 ntBASIC29.68■■■□□ 2.34
RTF1Q92541 AC245100.8-202ENST00000629247 1058 ntBASIC29.68■■■□□ 2.34
RTF1Q92541 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC29.68■■■□□ 2.34
RTF1Q92541 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC29.68■■■□□ 2.34
RTF1Q92541 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC29.68■■■□□ 2.34
RTF1Q92541 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC29.68■■■□□ 2.34
RTF1Q92541 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC29.67■■■□□ 2.34
RTF1Q92541 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
RTF1Q92541 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC29.67■■■□□ 2.34
RTF1Q92541 NKILA-201ENST00000613231 537 ntTSL 4 BASIC29.67■■■□□ 2.34
RTF1Q92541 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
RTF1Q92541 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
RTF1Q92541 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC29.67■■■□□ 2.34
RTF1Q92541 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC29.66■■■□□ 2.34
RTF1Q92541 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC29.66■■■□□ 2.34
RTF1Q92541 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
RTF1Q92541 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC29.66■■■□□ 2.34
RTF1Q92541 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC29.66■■■□□ 2.34
RTF1Q92541 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC29.66■■■□□ 2.34
RTF1Q92541 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
RTF1Q92541 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC29.65■■■□□ 2.34
RTF1Q92541 SERBP1P1-201ENST00000396021 1160 ntBASIC29.65■■■□□ 2.34
RTF1Q92541 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC29.65■■■□□ 2.34
RTF1Q92541 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
RTF1Q92541 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
RTF1Q92541 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC29.65■■■□□ 2.34
RTF1Q92541 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
RTF1Q92541 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
RTF1Q92541 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
RTF1Q92541 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
RTF1Q92541 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC29.64■■■□□ 2.34
RTF1Q92541 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC29.63■■■□□ 2.33
RTF1Q92541 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC29.63■■■□□ 2.33
RTF1Q92541 EDA-201ENST00000338901 1233 ntBASIC29.63■■■□□ 2.33
RTF1Q92541 PTCHD3P2-201ENST00000424937 1205 ntBASIC29.63■■■□□ 2.33
RTF1Q92541 AC142381.2-201ENST00000566120 298 ntBASIC29.63■■■□□ 2.33
RTF1Q92541 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
RTF1Q92541 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
RTF1Q92541 AL031432.3-201ENST00000607698 485 ntBASIC29.62■■■□□ 2.33
RTF1Q92541 AL355001.2-201ENST00000620617 1191 ntBASIC29.62■■■□□ 2.33
RTF1Q92541 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
RTF1Q92541 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.62■■■□□ 2.33
RTF1Q92541 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
RTF1Q92541 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
RTF1Q92541 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC29.61■■■□□ 2.33
RTF1Q92541 VGF-203ENST00000611537 1622 ntTSL 5 BASIC29.61■■■□□ 2.33
RTF1Q92541 LINC01124-201ENST00000409786 2117 ntBASIC29.61■■■□□ 2.33
RTF1Q92541 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
RTF1Q92541 EI24-213ENST00000618552 1747 ntTSL 5 BASIC29.61■■■□□ 2.33
RTF1Q92541 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
RTF1Q92541 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
RTF1Q92541 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC29.61■■■□□ 2.33
RTF1Q92541 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC29.6■■■□□ 2.33
RTF1Q92541 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC29.6■■■□□ 2.33
RTF1Q92541 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC29.6■■■□□ 2.33
RTF1Q92541 AC009086.3-201ENST00000623486 1008 ntBASIC29.6■■■□□ 2.33
RTF1Q92541 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC29.6■■■□□ 2.33
RTF1Q92541 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC29.6■■■□□ 2.33
RTF1Q92541 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC29.6■■■□□ 2.33
RTF1Q92541 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
RTF1Q92541 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
RTF1Q92541 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC29.6■■■□□ 2.33
RTF1Q92541 AC141586.4-201ENST00000624558 1573 ntBASIC29.6■■■□□ 2.33
RTF1Q92541 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms