Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC25.35■■□□□ 1.65
NKX3-2P78367 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC25.34■■□□□ 1.65
NKX3-2P78367 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
NKX3-2P78367 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
NKX3-2P78367 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
NKX3-2P78367 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
NKX3-2P78367 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
NKX3-2P78367 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
NKX3-2P78367 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
NKX3-2P78367 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC25.34■■□□□ 1.65
NKX3-2P78367 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC25.34■■□□□ 1.65
NKX3-2P78367 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
NKX3-2P78367 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
NKX3-2P78367 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC25.34■■□□□ 1.65
NKX3-2P78367 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC25.34■■□□□ 1.65
NKX3-2P78367 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC25.33■■□□□ 1.65
NKX3-2P78367 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
NKX3-2P78367 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC25.33■■□□□ 1.65
NKX3-2P78367 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC25.33■■□□□ 1.65
NKX3-2P78367 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC25.33■■□□□ 1.65
NKX3-2P78367 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
NKX3-2P78367 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC25.33■■□□□ 1.65
NKX3-2P78367 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC25.33■■□□□ 1.65
NKX3-2P78367 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.64
NKX3-2P78367 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
NKX3-2P78367 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
NKX3-2P78367 ASB1-202ENST00000409297 878 ntTSL 5 BASIC25.32■■□□□ 1.64
NKX3-2P78367 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
NKX3-2P78367 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
NKX3-2P78367 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
NKX3-2P78367 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
NKX3-2P78367 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC25.31■■□□□ 1.64
NKX3-2P78367 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
NKX3-2P78367 HACD1-201ENST00000326961 773 ntTSL 2 BASIC25.31■■□□□ 1.64
NKX3-2P78367 AC027612.3-201ENST00000413684 1047 ntBASIC25.31■■□□□ 1.64
NKX3-2P78367 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
NKX3-2P78367 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC25.31■■□□□ 1.64
NKX3-2P78367 AICDA-202ENST00000537228 667 ntTSL 5 BASIC25.31■■□□□ 1.64
NKX3-2P78367 AC126544.1-201ENST00000580842 1059 ntBASIC25.31■■□□□ 1.64
NKX3-2P78367 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC25.31■■□□□ 1.64
NKX3-2P78367 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
NKX3-2P78367 AL031602.1-201ENST00000633169 911 ntBASIC25.31■■□□□ 1.64
NKX3-2P78367 ALDH1A3-203ENST00000557963 1670 ntBASIC25.31■■□□□ 1.64
NKX3-2P78367 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
NKX3-2P78367 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
NKX3-2P78367 HLA-L-211ENST00000482052 1765 ntBASIC25.31■■□□□ 1.64
NKX3-2P78367 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC25.31■■□□□ 1.64
NKX3-2P78367 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
NKX3-2P78367 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC25.3■■□□□ 1.64
NKX3-2P78367 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
NKX3-2P78367 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC25.3■■□□□ 1.64
NKX3-2P78367 KRT18P5-201ENST00000436075 1291 ntBASIC25.3■■□□□ 1.64
NKX3-2P78367 AC123595.1-201ENST00000440769 1046 ntBASIC25.3■■□□□ 1.64
NKX3-2P78367 SLC47A1P1-202ENST00000449666 945 ntBASIC25.3■■□□□ 1.64
NKX3-2P78367 AC022517.1-201ENST00000592429 346 ntBASIC25.3■■□□□ 1.64
NKX3-2P78367 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
NKX3-2P78367 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
NKX3-2P78367 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
NKX3-2P78367 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC25.29■■□□□ 1.64
NKX3-2P78367 AC145676.1-201ENST00000514988 2004 ntBASIC25.29■■□□□ 1.64
NKX3-2P78367 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC25.29■■□□□ 1.64
NKX3-2P78367 AL358852.1-201ENST00000623174 1268 ntBASIC25.29■■□□□ 1.64
NKX3-2P78367 RARRES2P11-201ENST00000635158 484 ntBASIC25.29■■□□□ 1.64
NKX3-2P78367 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC25.29■■□□□ 1.64
NKX3-2P78367 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC25.29■■□□□ 1.64
NKX3-2P78367 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC25.29■■□□□ 1.64
NKX3-2P78367 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC25.28■■□□□ 1.64
NKX3-2P78367 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
NKX3-2P78367 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
NKX3-2P78367 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
NKX3-2P78367 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC25.28■■□□□ 1.64
NKX3-2P78367 RAB43-208ENST00000615093 783 ntTSL 5 BASIC25.28■■□□□ 1.64
NKX3-2P78367 TSPY26P-201ENST00000476365 1326 ntBASIC25.28■■□□□ 1.64
NKX3-2P78367 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC25.28■■□□□ 1.64
NKX3-2P78367 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC25.28■■□□□ 1.64
NKX3-2P78367 AC091060.1-201ENST00000623524 1766 ntBASIC25.28■■□□□ 1.64
NKX3-2P78367 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC25.28■■□□□ 1.64
NKX3-2P78367 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC25.27■■□□□ 1.64
NKX3-2P78367 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC25.27■■□□□ 1.64
NKX3-2P78367 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
NKX3-2P78367 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC25.27■■□□□ 1.64
NKX3-2P78367 IGHV3-19-201ENST00000521488 291 ntBASIC25.27■■□□□ 1.64
NKX3-2P78367 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC25.27■■□□□ 1.64
NKX3-2P78367 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC25.27■■□□□ 1.64
NKX3-2P78367 DUX4L2-201ENST00000561772 1275 ntBASIC25.27■■□□□ 1.64
NKX3-2P78367 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC25.27■■□□□ 1.64
NKX3-2P78367 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC25.27■■□□□ 1.64
NKX3-2P78367 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
NKX3-2P78367 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC25.27■■□□□ 1.64
NKX3-2P78367 DUX4L6-201ENST00000626483 1275 ntBASIC25.27■■□□□ 1.64
NKX3-2P78367 DUX4L1-201ENST00000627662 1275 ntBASIC25.27■■□□□ 1.64
NKX3-2P78367 DUX4L8-201ENST00000629013 1275 ntBASIC25.27■■□□□ 1.64
NKX3-2P78367 DUX4L3-201ENST00000630187 1275 ntBASIC25.27■■□□□ 1.64
NKX3-2P78367 DUX4L7-201ENST00000630678 1275 ntBASIC25.27■■□□□ 1.64
NKX3-2P78367 DUX4L5-201ENST00000630834 1275 ntBASIC25.27■■□□□ 1.64
NKX3-2P78367 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC25.27■■□□□ 1.64
NKX3-2P78367 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC25.26■■□□□ 1.63
NKX3-2P78367 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
NKX3-2P78367 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC25.26■■□□□ 1.63
NKX3-2P78367 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC25.26■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms