Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 DUSP8P4-201ENST00000399538 1761 ntBASIC30.49■■■□□ 2.47
COL18A1P39060 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC30.49■■■□□ 2.47
COL18A1P39060 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL18A1P39060 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL18A1P39060 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
COL18A1P39060 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL18A1P39060 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC30.49■■■□□ 2.47
COL18A1P39060 AC012414.1-201ENST00000556676 535 ntBASIC30.49■■■□□ 2.47
COL18A1P39060 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC30.49■■■□□ 2.47
COL18A1P39060 TSPY26P-201ENST00000476365 1326 ntBASIC30.49■■■□□ 2.47
COL18A1P39060 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL18A1P39060 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL18A1P39060 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL18A1P39060 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC30.49■■■□□ 2.47
COL18A1P39060 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC30.49■■■□□ 2.47
COL18A1P39060 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC30.49■■■□□ 2.47
COL18A1P39060 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
COL18A1P39060 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC30.49■■■□□ 2.47
COL18A1P39060 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC30.48■■■□□ 2.47
COL18A1P39060 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC30.48■■■□□ 2.47
COL18A1P39060 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
COL18A1P39060 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC30.48■■■□□ 2.47
COL18A1P39060 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC30.48■■■□□ 2.47
COL18A1P39060 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC30.48■■■□□ 2.47
COL18A1P39060 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
COL18A1P39060 AL121749.1-202ENST00000609313 2153 ntBASIC30.47■■■□□ 2.47
COL18A1P39060 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
COL18A1P39060 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC30.46■■■□□ 2.47
COL18A1P39060 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC30.46■■■□□ 2.47
COL18A1P39060 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC30.46■■■□□ 2.47
COL18A1P39060 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC30.46■■■□□ 2.47
COL18A1P39060 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC30.46■■■□□ 2.47
COL18A1P39060 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
COL18A1P39060 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
COL18A1P39060 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC30.44■■■□□ 2.46
COL18A1P39060 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
COL18A1P39060 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC30.44■■■□□ 2.46
COL18A1P39060 IGHV3-19-201ENST00000521488 291 ntBASIC30.44■■■□□ 2.46
COL18A1P39060 AC126544.1-201ENST00000580842 1059 ntBASIC30.44■■■□□ 2.46
COL18A1P39060 AL137784.2-201ENST00000607332 1000 ntBASIC30.44■■■□□ 2.46
COL18A1P39060 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC30.44■■■□□ 2.46
COL18A1P39060 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
COL18A1P39060 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
COL18A1P39060 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
COL18A1P39060 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC30.43■■■□□ 2.46
COL18A1P39060 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC30.43■■■□□ 2.46
COL18A1P39060 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC30.43■■■□□ 2.46
COL18A1P39060 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC30.43■■■□□ 2.46
COL18A1P39060 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
COL18A1P39060 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC30.43■■■□□ 2.46
COL18A1P39060 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
COL18A1P39060 pRNA.6-201ENST00000610482 90 ntBASIC30.43■■■□□ 2.46
COL18A1P39060 pRNA.5-201ENST00000612139 90 ntBASIC30.43■■■□□ 2.46
COL18A1P39060 pRNA.11-201ENST00000618423 90 ntBASIC30.43■■■□□ 2.46
COL18A1P39060 pRNA.13-201ENST00000619112 90 ntBASIC30.43■■■□□ 2.46
COL18A1P39060 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
COL18A1P39060 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC30.42■■■□□ 2.46
COL18A1P39060 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC30.42■■■□□ 2.46
COL18A1P39060 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC30.42■■■□□ 2.46
COL18A1P39060 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC30.42■■■□□ 2.46
COL18A1P39060 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
COL18A1P39060 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC30.42■■■□□ 2.46
COL18A1P39060 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
COL18A1P39060 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC30.41■■■□□ 2.46
COL18A1P39060 ME3-201ENST00000323418 1068 ntTSL 5 BASIC30.41■■■□□ 2.46
COL18A1P39060 AC123595.1-201ENST00000440769 1046 ntBASIC30.41■■■□□ 2.46
COL18A1P39060 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC30.41■■■□□ 2.46
COL18A1P39060 AICDA-202ENST00000537228 667 ntTSL 5 BASIC30.41■■■□□ 2.46
COL18A1P39060 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
COL18A1P39060 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC30.4■■■□□ 2.46
COL18A1P39060 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC30.4■■■□□ 2.46
COL18A1P39060 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
COL18A1P39060 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
COL18A1P39060 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC30.4■■■□□ 2.46
COL18A1P39060 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
COL18A1P39060 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC30.39■■■□□ 2.46
COL18A1P39060 MIR572-201ENST00000384983 95 ntBASIC30.39■■■□□ 2.46
COL18A1P39060 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC30.39■■■□□ 2.46
COL18A1P39060 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC30.39■■■□□ 2.46
COL18A1P39060 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
COL18A1P39060 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
COL18A1P39060 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
COL18A1P39060 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
COL18A1P39060 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
COL18A1P39060 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC30.38■■■□□ 2.45
COL18A1P39060 CEBPA-AS1-201ENST00000592982 2198 ntBASIC30.38■■■□□ 2.45
COL18A1P39060 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
COL18A1P39060 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC30.38■■■□□ 2.45
COL18A1P39060 AL358852.1-201ENST00000623174 1268 ntBASIC30.38■■■□□ 2.45
COL18A1P39060 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC30.38■■■□□ 2.45
COL18A1P39060 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC30.38■■■□□ 2.45
COL18A1P39060 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL18A1P39060 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL18A1P39060 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL18A1P39060 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC30.37■■■□□ 2.45
COL18A1P39060 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
COL18A1P39060 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC30.37■■■□□ 2.45
COL18A1P39060 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
COL18A1P39060 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
COL18A1P39060 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms