Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
VCANP13611 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
VCANP13611 AC090877.2-201ENST00000558441 1738 ntBASIC23.87■■□□□ 1.41
VCANP13611 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
VCANP13611 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC23.86■■□□□ 1.41
VCANP13611 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC23.86■■□□□ 1.41
VCANP13611 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
VCANP13611 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.86■■□□□ 1.41
VCANP13611 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC23.86■■□□□ 1.41
VCANP13611 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC23.85■■□□□ 1.41
VCANP13611 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
VCANP13611 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
VCANP13611 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC23.85■■□□□ 1.41
VCANP13611 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
VCANP13611 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
VCANP13611 CASP6-205ENST00000505486 538 ntTSL 4 BASIC23.85■■□□□ 1.41
VCANP13611 AP005435.1-201ENST00000529293 1178 ntBASIC23.85■■□□□ 1.41
VCANP13611 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC23.85■■□□□ 1.41
VCANP13611 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC23.84■■□□□ 1.41
VCANP13611 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
VCANP13611 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
VCANP13611 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
VCANP13611 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
VCANP13611 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
VCANP13611 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
VCANP13611 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
VCANP13611 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
VCANP13611 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
VCANP13611 BID-214ENST00000617586 542 ntTSL 5 BASIC23.84■■□□□ 1.41
VCANP13611 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC23.83■■□□□ 1.41
VCANP13611 REST-206ENST00000612429 1376 ntTSL 5 BASIC23.83■■□□□ 1.41
VCANP13611 REST-207ENST00000616975 1370 ntTSL 5 BASIC23.83■■□□□ 1.41
VCANP13611 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
VCANP13611 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
VCANP13611 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC23.83■■□□□ 1.41
VCANP13611 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
VCANP13611 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC23.83■■□□□ 1.41
VCANP13611 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
VCANP13611 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
VCANP13611 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.4
VCANP13611 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.4
VCANP13611 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
VCANP13611 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
VCANP13611 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
VCANP13611 AC126544.1-201ENST00000580842 1059 ntBASIC23.82■■□□□ 1.4
VCANP13611 SMUG1P1-201ENST00000590640 811 ntBASIC23.82■■□□□ 1.4
VCANP13611 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
VCANP13611 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
VCANP13611 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
VCANP13611 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC23.81■■□□□ 1.4
VCANP13611 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC23.81■■□□□ 1.4
VCANP13611 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
VCANP13611 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
VCANP13611 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
VCANP13611 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC23.81■■□□□ 1.4
VCANP13611 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
VCANP13611 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
VCANP13611 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
VCANP13611 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC23.8■■□□□ 1.4
VCANP13611 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.8■■□□□ 1.4
VCANP13611 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC23.8■■□□□ 1.4
VCANP13611 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
VCANP13611 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
VCANP13611 MAX-217ENST00000557277 728 ntTSL 3 BASIC23.8■■□□□ 1.4
VCANP13611 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
VCANP13611 MIR572-201ENST00000384983 95 ntBASIC23.79■■□□□ 1.4
VCANP13611 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC23.79■■□□□ 1.4
VCANP13611 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC23.79■■□□□ 1.4
VCANP13611 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
VCANP13611 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC23.78■■□□□ 1.4
VCANP13611 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
VCANP13611 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
VCANP13611 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
VCANP13611 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
VCANP13611 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC23.78■■□□□ 1.4
VCANP13611 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC23.78■■□□□ 1.4
VCANP13611 ITM2C-210ENST00000620962 501 ntBASIC23.78■■□□□ 1.4
VCANP13611 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
VCANP13611 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VCANP13611 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
VCANP13611 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC23.77■■□□□ 1.4
VCANP13611 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.77■■□□□ 1.4
VCANP13611 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC23.77■■□□□ 1.4
VCANP13611 ST7-202ENST00000323984 2142 ntTSL 5 BASIC23.77■■□□□ 1.4
VCANP13611 ST7-207ENST00000393449 2127 ntTSL 5 BASIC23.77■■□□□ 1.4
VCANP13611 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC23.77■■□□□ 1.4
VCANP13611 AL050303.2-201ENST00000619798 666 ntBASIC23.77■■□□□ 1.4
VCANP13611 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC23.77■■□□□ 1.39
VCANP13611 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC23.76■■□□□ 1.39
VCANP13611 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
VCANP13611 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.76■■□□□ 1.39
VCANP13611 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VCANP13611 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VCANP13611 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC23.76■■□□□ 1.39
VCANP13611 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
VCANP13611 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
VCANP13611 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
VCANP13611 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
VCANP13611 FAM201B-201ENST00000458407 597 ntBASIC23.75■■□□□ 1.39
VCANP13611 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms