Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL1P09341 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL1P09341 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL1P09341 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL1P09341 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL1P09341 BID-212ENST00000614949 1988 ntTSL 5 BASIC17.55■□□□□ 0.4
CXCL1P09341 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL1P09341 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL1P09341 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC17.55■□□□□ 0.4
CXCL1P09341 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL1P09341 LINC01971-201ENST00000617888 1048 ntBASIC17.55■□□□□ 0.4
CXCL1P09341 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CXCL1P09341 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL1P09341 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL1P09341 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC17.55■□□□□ 0.4
CXCL1P09341 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC17.55■□□□□ 0.4
CXCL1P09341 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CXCL1P09341 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL1P09341 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL1P09341 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CXCL1P09341 AL359504.2-201ENST00000605506 1601 ntBASIC17.54■□□□□ 0.4
CXCL1P09341 PALM-208ENST00000592155 2272 ntTSL 4 BASIC17.54■□□□□ 0.4
CXCL1P09341 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC17.54■□□□□ 0.4
CXCL1P09341 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CXCL1P09341 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CXCL1P09341 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CXCL1P09341 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC17.54■□□□□ 0.4
CXCL1P09341 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CXCL1P09341 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC17.53■□□□□ 0.4
CXCL1P09341 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL1P09341 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL1P09341 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL1P09341 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CXCL1P09341 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC17.53■□□□□ 0.4
CXCL1P09341 LSR-205ENST00000427250 1606 ntTSL 2 BASIC17.53■□□□□ 0.4
CXCL1P09341 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL1P09341 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL1P09341 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL1P09341 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL1P09341 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL1P09341 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL1P09341 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL1P09341 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CXCL1P09341 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CXCL1P09341 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CXCL1P09341 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CXCL1P09341 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CXCL1P09341 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CXCL1P09341 FBXW4P1-201ENST00000426721 2239 ntBASIC17.52■□□□□ 0.4
CXCL1P09341 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.4
CXCL1P09341 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC17.52■□□□□ 0.4
CXCL1P09341 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC17.52■□□□□ 0.4
CXCL1P09341 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CXCL1P09341 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC17.52■□□□□ 0.4
CXCL1P09341 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CXCL1P09341 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC17.52■□□□□ 0.39
CXCL1P09341 AL359258.2-201ENST00000564063 1566 ntBASIC17.52■□□□□ 0.39
CXCL1P09341 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CXCL1P09341 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CXCL1P09341 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CXCL1P09341 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CXCL1P09341 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CXCL1P09341 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.51■□□□□ 0.39
CXCL1P09341 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CXCL1P09341 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CXCL1P09341 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC17.51■□□□□ 0.39
CXCL1P09341 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC17.51■□□□□ 0.39
CXCL1P09341 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CXCL1P09341 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CXCL1P09341 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CXCL1P09341 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC17.51■□□□□ 0.39
CXCL1P09341 DUX4L13-201ENST00000554103 1267 ntBASIC17.51■□□□□ 0.39
CXCL1P09341 DUX4L15-201ENST00000611059 1267 ntBASIC17.51■□□□□ 0.39
CXCL1P09341 DUX4L23-201ENST00000615195 1269 ntBASIC17.51■□□□□ 0.39
CXCL1P09341 DUX4L24-201ENST00000617576 1269 ntBASIC17.51■□□□□ 0.39
CXCL1P09341 DUX4L22-201ENST00000618238 1269 ntBASIC17.51■□□□□ 0.39
CXCL1P09341 DUX4L20-201ENST00000619712 1269 ntBASIC17.51■□□□□ 0.39
CXCL1P09341 DUX4L21-201ENST00000622058 1269 ntBASIC17.51■□□□□ 0.39
CXCL1P09341 DUX4L10-201ENST00000622460 1267 ntBASIC17.51■□□□□ 0.39
CXCL1P09341 DUX4L25-201ENST00000624915 1269 ntBASIC17.51■□□□□ 0.39
CXCL1P09341 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CXCL1P09341 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CXCL1P09341 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CXCL1P09341 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC17.51■□□□□ 0.39
CXCL1P09341 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CXCL1P09341 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC17.51■□□□□ 0.39
CXCL1P09341 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL1P09341 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL1P09341 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
CXCL1P09341 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
CXCL1P09341 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL1P09341 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL1P09341 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL1P09341 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC17.5■□□□□ 0.39
CXCL1P09341 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL1P09341 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL1P09341 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL1P09341 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CXCL1P09341 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
CXCL1P09341 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms