Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 AC005324.6-201ENST00000587972 613 ntBASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 AL022328.3-201ENST00000607943 679 ntBASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 MIR6869-201ENST00000619434 62 ntBASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 AC006504.5-208ENST00000588784 2401 ntBASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
NUP54Q7Z3B4 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 AC152010.1-201ENST00000415779 2006 ntBASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 R3HDM2P2-201ENST00000401880 2116 ntBASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 AC126915.1-201ENST00000522847 1038 ntBASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 AC005730.2-201ENST00000564549 1184 ntBASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 AL118558.3-201ENST00000607414 1079 ntBASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 AL008638.5-201ENST00000623814 1298 ntBASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 AC090505.1-201ENST00000430515 1834 ntBASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
NUP54Q7Z3B4 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
NUP54Q7Z3B4 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms