Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC17.15■□□□□ 0.34
SYNE3Q6ZMZ3 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
SYNE3Q6ZMZ3 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC17.15■□□□□ 0.34
SYNE3Q6ZMZ3 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SYNE3Q6ZMZ3 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SYNE3Q6ZMZ3 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SYNE3Q6ZMZ3 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC17.15■□□□□ 0.34
SYNE3Q6ZMZ3 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SYNE3Q6ZMZ3 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SYNE3Q6ZMZ3 WARS-203ENST00000358655 2466 ntTSL 2 BASIC17.14■□□□□ 0.34
SYNE3Q6ZMZ3 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 RPL13AP20-201ENST00000459725 609 ntBASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 HNRNPA1P36-201ENST00000521313 955 ntBASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 IGHVIII-5-2-201ENST00000522505 261 ntBASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 GSN-209ENST00000449733 2702 ntTSL 2 BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SYNE3Q6ZMZ3 AC136759.1-202ENST00000530858 2194 ntBASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 RPS2P32-201ENST00000439199 892 ntBASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 AC012441.2-201ENST00000444843 739 ntBASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 AC021723.1-201ENST00000486306 515 ntBASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 AC005586.2-201ENST00000563946 837 ntBASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 AC244394.1-201ENST00000435000 1665 ntBASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 AC011498.7-201ENST00000624986 2027 ntBASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC17.13■□□□□ 0.33
SYNE3Q6ZMZ3 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SYNE3Q6ZMZ3 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms