Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC11.3□□□□□ -0.6
CXCL1P09341 EPHA1-201ENST00000275815 3363 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 DDR1-262ENST00000508312 3073 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
CXCL1P09341 SLC11A1-201ENST00000233202 3852 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 CDH8-201ENST00000299345 3728 ntTSL 5 BASIC11.3□□□□□ -0.6
CXCL1P09341 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC11.3□□□□□ -0.6
CXCL1P09341 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 HDAC8-207ENST00000373573 2014 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 FAM224B-201ENST00000458667 2032 ntTSL 2 BASIC11.3□□□□□ -0.6
CXCL1P09341 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
CXCL1P09341 SLC47A1-201ENST00000270570 3280 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 C9orf106-201ENST00000316786 3145 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 SP7-201ENST00000303846 2971 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 TRGV9-201ENST00000444775 1735 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
CXCL1P09341 ETS2-201ENST00000360214 3936 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
CXCL1P09341 PCDHGB3-201ENST00000576222 4727 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
CXCL1P09341 ANAPC7-203ENST00000455511 3045 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 RPS19-201ENST00000221975 500 ntTSL 3 BASIC11.3□□□□□ -0.6
CXCL1P09341 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC11.3□□□□□ -0.6
CXCL1P09341 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
CXCL1P09341 MRPL3P1-201ENST00000400109 1033 ntBASIC11.3□□□□□ -0.6
CXCL1P09341 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 AC007967.2-201ENST00000432613 625 ntBASIC11.3□□□□□ -0.6
CXCL1P09341 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
CXCL1P09341 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC11.3□□□□□ -0.6
CXCL1P09341 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC11.3□□□□□ -0.6
CXCL1P09341 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC11.3□□□□□ -0.6
CXCL1P09341 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC11.3□□□□□ -0.6
CXCL1P09341 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC11.3□□□□□ -0.6
CXCL1P09341 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC11.3□□□□□ -0.6
CXCL1P09341 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC11.3□□□□□ -0.6
CXCL1P09341 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC11.3□□□□□ -0.6
CXCL1P09341 AC105021.1-202ENST00000570572 669 ntBASIC11.3□□□□□ -0.6
CXCL1P09341 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC11.3□□□□□ -0.6
CXCL1P09341 SLC25A6P4-201ENST00000586535 553 ntBASIC11.3□□□□□ -0.6
CXCL1P09341 TBCB-211ENST00000589996 724 ntTSL 3 BASIC11.3□□□□□ -0.6
CXCL1P09341 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC11.3□□□□□ -0.6
CXCL1P09341 CITED2-204ENST00000618718 901 ntTSL 2 BASIC11.3□□□□□ -0.6
CXCL1P09341 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC11.3□□□□□ -0.6
CXCL1P09341 AC092902.6-201ENST00000641783 218 ntBASIC11.3□□□□□ -0.6
CXCL1P09341 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC11.3□□□□□ -0.6
CXCL1P09341 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 CHRNA7-223ENST00000637033 3204 ntTSL 5 BASIC11.3□□□□□ -0.6
CXCL1P09341 SRP54-201ENST00000216774 2279 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC11.3□□□□□ -0.6
CXCL1P09341 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC11.3□□□□□ -0.6
CXCL1P09341 MYADML-201ENST00000474610 2147 ntBASIC11.3□□□□□ -0.6
CXCL1P09341 HNRNPH1-216ENST00000510411 2105 ntTSL 5 BASIC11.3□□□□□ -0.6
CXCL1P09341 AC004623.1-201ENST00000624592 2127 ntBASIC11.3□□□□□ -0.6
CXCL1P09341 AL357140.3-201ENST00000639753 1983 ntBASIC11.3□□□□□ -0.6
CXCL1P09341 MPHOSPH10-201ENST00000244230 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 CYP4F11-201ENST00000248041 2977 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 POLG-202ENST00000442287 4487 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 DDX54-201ENST00000306014 4377 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 KLHL12-203ENST00000367261 3359 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC11.3□□□□□ -0.6
CXCL1P09341 MAP1S-202ENST00000544059 3399 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
CXCL1P09341 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 DOK4-210ENST00000566936 2851 ntTSL 3 BASIC11.3□□□□□ -0.6
CXCL1P09341 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 ZNF71-201ENST00000328070 5428 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CXCL1P09341 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
CXCL1P09341 KRT8P12-202ENST00000472924 1397 ntBASIC11.29□□□□□ -0.6
CXCL1P09341 AL583810.2-201ENST00000556430 3254 ntBASIC11.29□□□□□ -0.6
CXCL1P09341 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC11.29□□□□□ -0.6
CXCL1P09341 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
CXCL1P09341 AC008620.2-201ENST00000510294 1569 ntBASIC11.29□□□□□ -0.6
CXCL1P09341 MTHFSD-204ENST00000546093 2451 ntTSL 2 BASIC11.29□□□□□ -0.6
CXCL1P09341 GRIP2-206ENST00000637182 3727 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
CXCL1P09341 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC11.29□□□□□ -0.6
CXCL1P09341 ATG10-201ENST00000282185 3033 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 ANO6-203ENST00000425752 3558 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 IL10-202ENST00000423557 1630 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CXCL1P09341 SLC45A2-202ENST00000382102 2723 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms