Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 RPL3P5-201ENST00000441645 1232 ntBASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 RPL18AP8-201ENST00000486071 528 ntBASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
SHROOM4Q9ULL8 FGD5P1-202ENST00000614866 2498 ntBASIC27.2■■□□□ 1.95
SHROOM4Q9ULL8 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
SHROOM4Q9ULL8 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
SHROOM4Q9ULL8 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC27.2■■□□□ 1.95
SHROOM4Q9ULL8 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC27.2■■□□□ 1.95
SHROOM4Q9ULL8 AC018846.1-201ENST00000568231 183 ntBASIC27.2■■□□□ 1.95
SHROOM4Q9ULL8 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC27.2■■□□□ 1.95
SHROOM4Q9ULL8 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC27.2■■□□□ 1.95
SHROOM4Q9ULL8 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
SHROOM4Q9ULL8 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
SHROOM4Q9ULL8 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC27.2■■□□□ 1.95
SHROOM4Q9ULL8 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
SHROOM4Q9ULL8 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC27.2■■□□□ 1.94
SHROOM4Q9ULL8 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC27.2■■□□□ 1.94
SHROOM4Q9ULL8 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC27.2■■□□□ 1.94
SHROOM4Q9ULL8 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
SHROOM4Q9ULL8 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
SHROOM4Q9ULL8 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
SHROOM4Q9ULL8 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
SHROOM4Q9ULL8 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
SHROOM4Q9ULL8 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC27.2■■□□□ 1.94
SHROOM4Q9ULL8 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
SHROOM4Q9ULL8 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
SHROOM4Q9ULL8 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
SHROOM4Q9ULL8 AC046158.3-201ENST00000624947 2558 ntBASIC27.2■■□□□ 1.94
SHROOM4Q9ULL8 AC021305.1-201ENST00000520656 1514 ntBASIC27.2■■□□□ 1.94
SHROOM4Q9ULL8 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
SHROOM4Q9ULL8 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 FTX-216ENST00000638985 1367 ntTSL 5 BASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 PYY2-201ENST00000315776 282 ntBASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 AC098934.1-203ENST00000442868 1262 ntBASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
SHROOM4Q9ULL8 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 AC215219.1-201ENST00000400706 1817 ntBASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 KRT17P5-201ENST00000332088 839 ntBASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 AC108734.2-201ENST00000420887 1069 ntBASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 RGS5-216ENST00000449680 788 ntTSL 3 BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 RN7SL530P-201ENST00000485097 298 ntBASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 IGHV1-12-201ENST00000518307 205 ntBASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC27.18■■□□□ 1.94
SHROOM4Q9ULL8 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC27.17■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms