Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 NEU3-203ENST00000529024 581 ntTSL 3 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 AC123567.1-201ENST00000548294 1261 ntBASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 AC023310.3-201ENST00000557027 670 ntBASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 AC100756.1-201ENST00000562736 682 ntBASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 AC138749.3-201ENST00000567691 622 ntBASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 AC079791.1-201ENST00000605356 973 ntBASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 AC008494.3-201ENST00000606615 944 ntBASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 AC116165.1-201ENST00000611806 668 ntBASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 AL157414.3-201ENST00000624276 1954 ntBASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 PCDHA5-203ENST00000614258 4248 ntBASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 AC073548.1-201ENST00000624088 1882 ntBASIC13.7□□□□□ -0.22
DEPDC4Q8N2C3 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 AC012370.2-204ENST00000601940 1320 ntTSL 5 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 API5-203ENST00000455725 2257 ntTSL 2 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 SPDYE18-201ENST00000510091 1050 ntBASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 AC124242.1-203ENST00000517747 817 ntTSL 3 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 FADS2-205ENST00000517839 469 ntTSL 3 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 PIGL-212ENST00000581006 554 ntTSL 4 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 C2-206ENST00000442278 2434 ntTSL 2 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC13.69□□□□□ -0.22
DEPDC4Q8N2C3 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 CICP16-201ENST00000502609 2813 ntBASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms