Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
NPAS3Q8IXF0 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
NPAS3Q8IXF0 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.96□□□□□ -0.01
NPAS3Q8IXF0 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NPAS3Q8IXF0 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NPAS3Q8IXF0 BAK1P1-201ENST00000317045 636 ntBASIC14.96□□□□□ -0.01
NPAS3Q8IXF0 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
NPAS3Q8IXF0 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
NPAS3Q8IXF0 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
NPAS3Q8IXF0 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC14.96□□□□□ -0.01
NPAS3Q8IXF0 DPY19L2P5-201ENST00000456300 331 ntBASIC14.96□□□□□ -0.01
NPAS3Q8IXF0 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
NPAS3Q8IXF0 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
NPAS3Q8IXF0 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC14.96□□□□□ -0.01
NPAS3Q8IXF0 ELP5-212ENST00000574255 671 ntTSL 2 BASIC14.96□□□□□ -0.01
NPAS3Q8IXF0 DBP-202ENST00000593500 712 ntTSL 2 BASIC14.96□□□□□ -0.01
NPAS3Q8IXF0 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC14.96□□□□□ -0.01
NPAS3Q8IXF0 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC14.96□□□□□ -0.01
NPAS3Q8IXF0 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.96□□□□□ -0.01
NPAS3Q8IXF0 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.96□□□□□ -0.02
NPAS3Q8IXF0 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC14.96□□□□□ -0.02
NPAS3Q8IXF0 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC14.96□□□□□ -0.02
NPAS3Q8IXF0 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
NPAS3Q8IXF0 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 RN7SKP109-201ENST00000410592 316 ntBASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 ALG1L6P-201ENST00000515248 758 ntBASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 AC073575.1-201ENST00000551125 596 ntTSL 3 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 MIR2392-201ENST00000584881 84 ntBASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 AC021016.3-201ENST00000608367 477 ntBASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPAS3Q8IXF0 AC068418.2-201ENST00000577309 3703 ntBASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 RPS23-204ENST00000507980 836 ntTSL 2 BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPAS3Q8IXF0 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms