Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDH9Q9HC56 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
PCDH9Q9HC56 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC15.07■□□□□ 0
PCDH9Q9HC56 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC15.07■□□□□ 0
PCDH9Q9HC56 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC15.07■□□□□ 0
PCDH9Q9HC56 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC15.07■□□□□ 0
PCDH9Q9HC56 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDH9Q9HC56 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDH9Q9HC56 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC15.07■□□□□ 0
PCDH9Q9HC56 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
PCDH9Q9HC56 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDH9Q9HC56 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.07■□□□□ 0
PCDH9Q9HC56 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDH9Q9HC56 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.07■□□□□ 0
PCDH9Q9HC56 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDH9Q9HC56 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC15.07■□□□□ 0
PCDH9Q9HC56 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC15.07■□□□□ 0
PCDH9Q9HC56 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
PCDH9Q9HC56 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC15.07■□□□□ 0
PCDH9Q9HC56 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.07■□□□□ 0
PCDH9Q9HC56 AC079316.1-201ENST00000548397 411 ntBASIC15.07■□□□□ 0
PCDH9Q9HC56 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC15.07■□□□□ 0
PCDH9Q9HC56 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC15.07■□□□□ 0
PCDH9Q9HC56 MIR6775-201ENST00000617557 69 ntBASIC15.07■□□□□ 0
PCDH9Q9HC56 MVK-217ENST00000639206 367 ntTSL 5 BASIC15.07■□□□□ 0
PCDH9Q9HC56 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC15.07■□□□□ 0
PCDH9Q9HC56 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDH9Q9HC56 AHCYP2-201ENST00000430630 1300 ntBASIC15.07■□□□□ 0
PCDH9Q9HC56 AC064801.2-201ENST00000625052 1303 ntBASIC15.07■□□□□ 0
PCDH9Q9HC56 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
PCDH9Q9HC56 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC15.07■□□□□ 0
PCDH9Q9HC56 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC15.07■□□□□ 0
PCDH9Q9HC56 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
PCDH9Q9HC56 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDH9Q9HC56 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC15.07■□□□□ 0
PCDH9Q9HC56 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC15.07■□□□□ 0
PCDH9Q9HC56 AC009093.2-202ENST00000620513 2079 ntBASIC15.07■□□□□ 0
PCDH9Q9HC56 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
PCDH9Q9HC56 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDH9Q9HC56 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDH9Q9HC56 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
PCDH9Q9HC56 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC15.07■□□□□ 0
PCDH9Q9HC56 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PCDH9Q9HC56 PPP1R26P4-201ENST00000619065 3527 ntBASIC15.06■□□□□ 0
PCDH9Q9HC56 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC15.06■□□□□ 0
PCDH9Q9HC56 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC15.06■□□□□ 0
PCDH9Q9HC56 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
PCDH9Q9HC56 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC15.06■□□□□ 0
PCDH9Q9HC56 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
PCDH9Q9HC56 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 OR8S1-201ENST00000310194 1080 ntBASIC15.06■□□□□ 0
PCDH9Q9HC56 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 SNX21-203ENST00000372541 771 ntTSL 2 BASIC15.06■□□□□ 0
PCDH9Q9HC56 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
PCDH9Q9HC56 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.06■□□□□ 0
PCDH9Q9HC56 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC15.06■□□□□ 0
PCDH9Q9HC56 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC15.06■□□□□ 0
PCDH9Q9HC56 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC15.06■□□□□ 0
PCDH9Q9HC56 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 AC027237.1-201ENST00000560942 655 ntBASIC15.06■□□□□ 0
PCDH9Q9HC56 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC15.06■□□□□ 0
PCDH9Q9HC56 AC017083.2-201ENST00000608069 979 ntBASIC15.06■□□□□ 0
PCDH9Q9HC56 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
PCDH9Q9HC56 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
PCDH9Q9HC56 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 KRT8P28-201ENST00000433288 1390 ntBASIC15.06■□□□□ 0
PCDH9Q9HC56 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC15.06■□□□□ 0
PCDH9Q9HC56 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
PCDH9Q9HC56 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
PCDH9Q9HC56 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC15.06■□□□□ 0
PCDH9Q9HC56 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC15.06■□□□□ 0
PCDH9Q9HC56 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC15.06■□□□□ 0
PCDH9Q9HC56 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
PCDH9Q9HC56 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ 0
PCDH9Q9HC56 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PCDH9Q9HC56 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC15.05■□□□□ 0
PCDH9Q9HC56 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC15.05■□□□□ 0
PCDH9Q9HC56 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC15.05■□□□□ -0
PCDH9Q9HC56 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PCDH9Q9HC56 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC15.05■□□□□ -0
PCDH9Q9HC56 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms