Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
CCDC28BQ9BUN5 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 POM121L14P-201ENST00000406100 1558 ntBASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 C1QBPP1-201ENST00000400117 770 ntBASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 TREML5P-201ENST00000421694 576 ntBASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 FO681548.1-201ENST00000455617 1132 ntBASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 KLK3-207ENST00000595952 969 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 AC004466.1-201ENST00000599515 1080 ntBASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 AL390955.2-201ENST00000603032 514 ntBASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 BX088702.1-201ENST00000610784 235 ntBASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28BQ9BUN5 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 ACTBP8-201ENST00000403258 1108 ntBASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms