Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
CDH12P55289 CALY-202ENST00000368555 783 ntTSL 2 BASIC13.65□□□□□ -0.22
CDH12P55289 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
CDH12P55289 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
CDH12P55289 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
CDH12P55289 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC13.65□□□□□ -0.22
CDH12P55289 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CDH12P55289 KRT18P25-201ENST00000508931 1278 ntBASIC13.65□□□□□ -0.22
CDH12P55289 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDH12P55289 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDH12P55289 PAM16-204ENST00000571941 674 ntTSL 3 BASIC13.65□□□□□ -0.22
CDH12P55289 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC13.65□□□□□ -0.22
CDH12P55289 AC004466.1-201ENST00000599515 1080 ntBASIC13.65□□□□□ -0.22
CDH12P55289 WFDC1-204ENST00000613603 549 ntBASIC13.65□□□□□ -0.22
CDH12P55289 CU634019.7-201ENST00000624153 1185 ntBASIC13.65□□□□□ -0.22
CDH12P55289 FP236241.2-201ENST00000624906 1185 ntBASIC13.65□□□□□ -0.22
CDH12P55289 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDH12P55289 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
CDH12P55289 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDH12P55289 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC13.65□□□□□ -0.22
CDH12P55289 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDH12P55289 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
CDH12P55289 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDH12P55289 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CDH12P55289 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.65□□□□□ -0.22
CDH12P55289 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC13.65□□□□□ -0.22
CDH12P55289 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
CDH12P55289 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDH12P55289 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CDH12P55289 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC13.65□□□□□ -0.22
CDH12P55289 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
CDH12P55289 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.23
CDH12P55289 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
CDH12P55289 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
CDH12P55289 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
CDH12P55289 KRT8P35-201ENST00000483942 1338 ntBASIC13.64□□□□□ -0.23
CDH12P55289 AC015818.8-201ENST00000587907 1519 ntBASIC13.64□□□□□ -0.23
CDH12P55289 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDH12P55289 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC13.64□□□□□ -0.23
CDH12P55289 HPD-204ENST00000543163 1709 ntTSL 5 BASIC13.64□□□□□ -0.23
CDH12P55289 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC13.64□□□□□ -0.23
CDH12P55289 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDH12P55289 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC13.64□□□□□ -0.23
CDH12P55289 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
CDH12P55289 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDH12P55289 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC13.64□□□□□ -0.23
CDH12P55289 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC13.64□□□□□ -0.23
CDH12P55289 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CDH12P55289 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
CDH12P55289 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDH12P55289 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CDH12P55289 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDH12P55289 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CDH12P55289 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDH12P55289 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC13.64□□□□□ -0.23
CDH12P55289 AL162726.2-201ENST00000438986 1017 ntBASIC13.64□□□□□ -0.23
CDH12P55289 BCRP1-201ENST00000444246 691 ntBASIC13.64□□□□□ -0.23
CDH12P55289 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC13.64□□□□□ -0.23
CDH12P55289 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CDH12P55289 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CDH12P55289 AC138761.1-201ENST00000584393 385 ntBASIC13.64□□□□□ -0.23
CDH12P55289 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC13.64□□□□□ -0.23
CDH12P55289 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC13.64□□□□□ -0.23
CDH12P55289 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDH12P55289 AC099521.3-201ENST00000624251 2938 ntBASIC13.64□□□□□ -0.23
CDH12P55289 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDH12P55289 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDH12P55289 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC13.64□□□□□ -0.23
CDH12P55289 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CDH12P55289 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC13.64□□□□□ -0.23
CDH12P55289 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC13.64□□□□□ -0.23
CDH12P55289 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
CDH12P55289 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC13.64□□□□□ -0.23
CDH12P55289 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDH12P55289 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDH12P55289 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CDH12P55289 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CDH12P55289 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CDH12P55289 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CDH12P55289 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC13.64□□□□□ -0.23
CDH12P55289 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC13.64□□□□□ -0.23
CDH12P55289 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CDH12P55289 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDH12P55289 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDH12P55289 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CDH12P55289 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CDH12P55289 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
CDH12P55289 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CDH12P55289 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC13.63□□□□□ -0.23
CDH12P55289 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CDH12P55289 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CDH12P55289 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CDH12P55289 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CDH12P55289 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CDH12P55289 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC13.63□□□□□ -0.23
CDH12P55289 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CDH12P55289 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CDH12P55289 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
CDH12P55289 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CDH12P55289 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms