Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC9P31274 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC18.95■□□□□ 0.62
HOXC9P31274 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC18.95■□□□□ 0.62
HOXC9P31274 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC18.95■□□□□ 0.62
HOXC9P31274 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC9P31274 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
HOXC9P31274 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
HOXC9P31274 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC9P31274 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC9P31274 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC18.95■□□□□ 0.62
HOXC9P31274 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC9P31274 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC9P31274 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
HOXC9P31274 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC18.95■□□□□ 0.62
HOXC9P31274 PSMD4P1-201ENST00000433951 1109 ntBASIC18.95■□□□□ 0.62
HOXC9P31274 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC18.95■□□□□ 0.62
HOXC9P31274 AC010234.1-201ENST00000494599 870 ntBASIC18.95■□□□□ 0.62
HOXC9P31274 SLC25A15P3-201ENST00000505530 290 ntBASIC18.95■□□□□ 0.62
HOXC9P31274 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC18.95■□□□□ 0.62
HOXC9P31274 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC9P31274 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC18.95■□□□□ 0.62
HOXC9P31274 NT5C-204ENST00000578337 582 ntTSL 2 BASIC18.95■□□□□ 0.62
HOXC9P31274 MIR4265-201ENST00000582152 99 ntBASIC18.95■□□□□ 0.62
HOXC9P31274 AP005264.5-201ENST00000590066 467 ntBASIC18.95■□□□□ 0.62
HOXC9P31274 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC9P31274 AC073592.2-201ENST00000623062 780 ntBASIC18.95■□□□□ 0.62
HOXC9P31274 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC18.95■□□□□ 0.62
HOXC9P31274 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC9P31274 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC9P31274 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC9P31274 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC9P31274 RPL13AP3-202ENST00000494676 1473 ntBASIC18.95■□□□□ 0.62
HOXC9P31274 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
HOXC9P31274 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC18.95■□□□□ 0.62
HOXC9P31274 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC9P31274 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC18.95■□□□□ 0.62
HOXC9P31274 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
HOXC9P31274 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC18.95■□□□□ 0.62
HOXC9P31274 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC18.94■□□□□ 0.62
HOXC9P31274 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC9P31274 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC9P31274 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC9P31274 FES-203ENST00000394302 2133 ntTSL 5 BASIC18.94■□□□□ 0.62
HOXC9P31274 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC9P31274 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC9P31274 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC18.94■□□□□ 0.62
HOXC9P31274 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC9P31274 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC9P31274 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
HOXC9P31274 AC103592.1-201ENST00000394513 664 ntBASIC18.94■□□□□ 0.62
HOXC9P31274 OR52M2P-201ENST00000414298 959 ntBASIC18.94■□□□□ 0.62
HOXC9P31274 ACTG1P19-201ENST00000418987 1116 ntBASIC18.94■□□□□ 0.62
HOXC9P31274 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC18.94■□□□□ 0.62
HOXC9P31274 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC9P31274 AC024293.1-201ENST00000467930 498 ntBASIC18.94■□□□□ 0.62
HOXC9P31274 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC18.94■□□□□ 0.62
HOXC9P31274 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC18.94■□□□□ 0.62
HOXC9P31274 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC18.94■□□□□ 0.62
HOXC9P31274 AL022344.2-201ENST00000568976 968 ntBASIC18.94■□□□□ 0.62
HOXC9P31274 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC18.94■□□□□ 0.62
HOXC9P31274 TP53-221ENST00000615910 1149 ntTSL 5 BASIC18.94■□□□□ 0.62
HOXC9P31274 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
HOXC9P31274 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC9P31274 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC9P31274 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
HOXC9P31274 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC9P31274 PDXDC2P-206ENST00000534700 1315 ntBASIC18.94■□□□□ 0.62
HOXC9P31274 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC9P31274 WARS-203ENST00000358655 2466 ntTSL 2 BASIC18.94■□□□□ 0.62
HOXC9P31274 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC18.94■□□□□ 0.62
HOXC9P31274 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC9P31274 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC9P31274 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC9P31274 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC18.93■□□□□ 0.62
HOXC9P31274 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC9P31274 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC9P31274 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC9P31274 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC9P31274 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
HOXC9P31274 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC9P31274 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC18.93■□□□□ 0.62
HOXC9P31274 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC18.93■□□□□ 0.62
HOXC9P31274 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
HOXC9P31274 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC9P31274 AL022313.4-201ENST00000562756 2046 ntBASIC18.93■□□□□ 0.62
HOXC9P31274 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC9P31274 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC9P31274 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC9P31274 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC18.93■□□□□ 0.62
HOXC9P31274 SARS-202ENST00000369923 1882 ntTSL 5 BASIC18.93■□□□□ 0.62
HOXC9P31274 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC9P31274 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC9P31274 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC9P31274 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC18.93■□□□□ 0.62
HOXC9P31274 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC18.93■□□□□ 0.62
HOXC9P31274 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC18.93■□□□□ 0.62
HOXC9P31274 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC18.93■□□□□ 0.62
HOXC9P31274 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC18.93■□□□□ 0.62
HOXC9P31274 OR2A1-AS1-210ENST00000496968 531 ntBASIC18.93■□□□□ 0.62
HOXC9P31274 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms