Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.84■□□□□ 0.29
LIG1P18858 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LIG1P18858 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
LIG1P18858 HPD-204ENST00000543163 1709 ntTSL 5 BASIC16.84■□□□□ 0.29
LIG1P18858 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LIG1P18858 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC16.84■□□□□ 0.29
LIG1P18858 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG1P18858 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LIG1P18858 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG1P18858 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC16.84■□□□□ 0.29
LIG1P18858 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG1P18858 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
LIG1P18858 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC16.84■□□□□ 0.29
LIG1P18858 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG1P18858 GALC-206ENST00000544807 2528 ntTSL 2 BASIC16.84■□□□□ 0.29
LIG1P18858 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
LIG1P18858 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
LIG1P18858 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
LIG1P18858 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
LIG1P18858 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
LIG1P18858 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
LIG1P18858 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG1P18858 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIG1P18858 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG1P18858 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG1P18858 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG1P18858 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG1P18858 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG1P18858 NIN-202ENST00000324330 4364 ntTSL 5 BASIC16.83■□□□□ 0.28
LIG1P18858 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIG1P18858 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG1P18858 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
LIG1P18858 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG1P18858 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIG1P18858 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
LIG1P18858 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG1P18858 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC16.83■□□□□ 0.28
LIG1P18858 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC16.83■□□□□ 0.28
LIG1P18858 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIG1P18858 CROT-203ENST00000419147 2959 ntTSL 2 BASIC16.83■□□□□ 0.28
LIG1P18858 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.83■□□□□ 0.28
LIG1P18858 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
LIG1P18858 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC16.83■□□□□ 0.28
LIG1P18858 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIG1P18858 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIG1P18858 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC16.83■□□□□ 0.28
LIG1P18858 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIG1P18858 NOP2-220ENST00000545915 630 ntTSL 2 BASIC16.83■□□□□ 0.28
LIG1P18858 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC16.83■□□□□ 0.28
LIG1P18858 SNX29P1-201ENST00000548357 1007 ntBASIC16.83■□□□□ 0.28
LIG1P18858 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC16.83■□□□□ 0.28
LIG1P18858 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
LIG1P18858 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC16.83■□□□□ 0.28
LIG1P18858 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIG1P18858 MIR6074-201ENST00000612054 107 ntBASIC16.83■□□□□ 0.28
LIG1P18858 AC244669.2-201ENST00000612320 853 ntBASIC16.83■□□□□ 0.28
LIG1P18858 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG1P18858 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
LIG1P18858 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC16.83■□□□□ 0.28
LIG1P18858 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC16.83■□□□□ 0.28
LIG1P18858 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG1P18858 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC16.83■□□□□ 0.28
LIG1P18858 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIG1P18858 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG1P18858 USP31-203ENST00000567975 2142 ntTSL 2 BASIC16.82■□□□□ 0.28
LIG1P18858 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC16.82■□□□□ 0.28
LIG1P18858 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG1P18858 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG1P18858 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
LIG1P18858 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG1P18858 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC16.82■□□□□ 0.28
LIG1P18858 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC16.82■□□□□ 0.28
LIG1P18858 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG1P18858 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.82■□□□□ 0.28
LIG1P18858 PDIA3P1-201ENST00000471856 1510 ntBASIC16.82■□□□□ 0.28
LIG1P18858 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC16.82■□□□□ 0.28
LIG1P18858 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG1P18858 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
LIG1P18858 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG1P18858 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
LIG1P18858 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIG1P18858 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.82■□□□□ 0.28
LIG1P18858 ACKR1-201ENST00000368121 1240 ntBASIC16.82■□□□□ 0.28
LIG1P18858 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC16.82■□□□□ 0.28
LIG1P18858 AC005229.1-201ENST00000392885 409 ntBASIC16.82■□□□□ 0.28
LIG1P18858 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC16.82■□□□□ 0.28
LIG1P18858 MIR1909-201ENST00000411312 80 ntBASIC16.82■□□□□ 0.28
LIG1P18858 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
LIG1P18858 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LIG1P18858 AC244107.1-201ENST00000442033 332 ntBASIC16.82■□□□□ 0.28
LIG1P18858 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC16.82■□□□□ 0.28
LIG1P18858 FO681548.1-201ENST00000455617 1132 ntBASIC16.82■□□□□ 0.28
LIG1P18858 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC16.82■□□□□ 0.28
LIG1P18858 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
LIG1P18858 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC16.82■□□□□ 0.28
LIG1P18858 AC145423.3-201ENST00000615987 467 ntBASIC16.82■□□□□ 0.28
LIG1P18858 WNT11-204ENST00000621122 789 ntTSL 5 BASIC16.82■□□□□ 0.28
LIG1P18858 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC16.82■□□□□ 0.28
LIG1P18858 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG1P18858 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms