Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MBD4O95243 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MBD4O95243 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC17.3■□□□□ 0.36
MBD4O95243 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC17.29■□□□□ 0.36
MBD4O95243 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
MBD4O95243 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
MBD4O95243 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC17.29■□□□□ 0.36
MBD4O95243 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MBD4O95243 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
MBD4O95243 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MBD4O95243 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MBD4O95243 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC17.29■□□□□ 0.36
MBD4O95243 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC17.29■□□□□ 0.36
MBD4O95243 AC006335.1-201ENST00000445200 547 ntBASIC17.29■□□□□ 0.36
MBD4O95243 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC17.29■□□□□ 0.36
MBD4O95243 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC17.29■□□□□ 0.36
MBD4O95243 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC17.29■□□□□ 0.36
MBD4O95243 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC17.29■□□□□ 0.36
MBD4O95243 IRF3-215ENST00000596822 823 ntTSL 3 BASIC17.29■□□□□ 0.36
MBD4O95243 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC17.29■□□□□ 0.36
MBD4O95243 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC17.29■□□□□ 0.36
MBD4O95243 AL591471.1-201ENST00000621855 229 ntBASIC17.29■□□□□ 0.36
MBD4O95243 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
MBD4O95243 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC17.29■□□□□ 0.36
MBD4O95243 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC17.29■□□□□ 0.36
MBD4O95243 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MBD4O95243 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC17.29■□□□□ 0.36
MBD4O95243 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
MBD4O95243 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MBD4O95243 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MBD4O95243 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
MBD4O95243 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
MBD4O95243 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MBD4O95243 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC17.29■□□□□ 0.36
MBD4O95243 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
MBD4O95243 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC17.29■□□□□ 0.36
MBD4O95243 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC17.29■□□□□ 0.36
MBD4O95243 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MBD4O95243 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
MBD4O95243 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC17.29■□□□□ 0.36
MBD4O95243 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
MBD4O95243 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MBD4O95243 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MBD4O95243 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
MBD4O95243 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
MBD4O95243 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MBD4O95243 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MBD4O95243 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC17.28■□□□□ 0.36
MBD4O95243 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MBD4O95243 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MBD4O95243 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MBD4O95243 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
MBD4O95243 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MBD4O95243 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MBD4O95243 HPD-204ENST00000543163 1709 ntTSL 5 BASIC17.28■□□□□ 0.36
MBD4O95243 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC17.28■□□□□ 0.36
MBD4O95243 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC17.28■□□□□ 0.36
MBD4O95243 RN7SL277P-201ENST00000481521 288 ntBASIC17.28■□□□□ 0.36
MBD4O95243 RN7SL720P-201ENST00000488178 304 ntBASIC17.28■□□□□ 0.36
MBD4O95243 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
MBD4O95243 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
MBD4O95243 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC17.28■□□□□ 0.36
MBD4O95243 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC17.28■□□□□ 0.36
MBD4O95243 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC17.28■□□□□ 0.36
MBD4O95243 AL022334.2-201ENST00000610000 484 ntBASIC17.28■□□□□ 0.36
MBD4O95243 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MBD4O95243 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC17.28■□□□□ 0.36
MBD4O95243 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MBD4O95243 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
MBD4O95243 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
MBD4O95243 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MBD4O95243 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MBD4O95243 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC17.28■□□□□ 0.36
MBD4O95243 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MBD4O95243 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
MBD4O95243 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
MBD4O95243 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MBD4O95243 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MBD4O95243 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MBD4O95243 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MBD4O95243 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MBD4O95243 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MBD4O95243 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
MBD4O95243 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MBD4O95243 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
MBD4O95243 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MBD4O95243 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MBD4O95243 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
MBD4O95243 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MBD4O95243 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MBD4O95243 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
MBD4O95243 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MBD4O95243 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MBD4O95243 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
MBD4O95243 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
MBD4O95243 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC17.27■□□□□ 0.36
MBD4O95243 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
MBD4O95243 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC17.27■□□□□ 0.36
MBD4O95243 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
MBD4O95243 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms