Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SHOX2O60902 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SHOX2O60902 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SHOX2O60902 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SHOX2O60902 TCAF2-201ENST00000357344 2958 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SHOX2O60902 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
SHOX2O60902 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC14.58□□□□□ -0.08
SHOX2O60902 AL591424.1-201ENST00000442569 1213 ntBASIC14.58□□□□□ -0.08
SHOX2O60902 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC14.58□□□□□ -0.08
SHOX2O60902 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC14.58□□□□□ -0.08
SHOX2O60902 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
SHOX2O60902 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC14.58□□□□□ -0.08
SHOX2O60902 KRT8P23-201ENST00000560090 1207 ntBASIC14.58□□□□□ -0.08
SHOX2O60902 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.58□□□□□ -0.08
SHOX2O60902 NME4-212ENST00000621774 904 ntTSL 3 BASIC14.58□□□□□ -0.08
SHOX2O60902 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SHOX2O60902 ADAM32-206ENST00000519315 2168 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SHOX2O60902 ELOVL6-201ENST00000302274 3090 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
SHOX2O60902 DYNC1LI1-201ENST00000273130 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SHOX2O60902 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SHOX2O60902 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC14.58□□□□□ -0.08
SHOX2O60902 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
SHOX2O60902 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
SHOX2O60902 ATF6B-209ENST00000375201 2624 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SHOX2O60902 ATF6B-210ENST00000375203 2620 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
SHOX2O60902 CDHR5-202ENST00000358353 3635 ntAPPRIS P4 TSL 5 BASIC14.58□□□□□ -0.08
SHOX2O60902 AL356966.1-201ENST00000454752 2367 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SHOX2O60902 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SHOX2O60902 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC14.57□□□□□ -0.08
SHOX2O60902 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC14.57□□□□□ -0.08
SHOX2O60902 ASCC3-203ENST00000369143 3433 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
SHOX2O60902 MPHOSPH10-201ENST00000244230 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 DPP8-204ENST00000358939 2822 ntTSL 2 BASIC14.57□□□□□ -0.08
SHOX2O60902 ESRRB-204ENST00000509242 2849 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC14.57□□□□□ -0.08
SHOX2O60902 DRG2-202ENST00000395726 1897 ntTSL 5 BASIC14.57□□□□□ -0.08
SHOX2O60902 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC14.57□□□□□ -0.08
SHOX2O60902 S1PR1-201ENST00000305352 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
SHOX2O60902 ZNF573-204ENST00000392138 2266 ntTSL 2 BASIC14.57□□□□□ -0.08
SHOX2O60902 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 AC011700.1-201ENST00000610409 2627 ntBASIC14.57□□□□□ -0.08
SHOX2O60902 ARHGEF9-226ENST00000636392 1920 ntTSL 5 BASIC14.57□□□□□ -0.08
SHOX2O60902 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
SHOX2O60902 DCAF12L1-201ENST00000371126 3382 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.57□□□□□ -0.08
SHOX2O60902 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
SHOX2O60902 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
SHOX2O60902 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC14.57□□□□□ -0.08
SHOX2O60902 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 IGHV3-62-201ENST00000520057 340 ntBASIC14.57□□□□□ -0.08
SHOX2O60902 SLC25A39P2-201ENST00000537614 270 ntBASIC14.57□□□□□ -0.08
SHOX2O60902 AC090617.6-201ENST00000572790 443 ntTSL 3 BASIC14.57□□□□□ -0.08
SHOX2O60902 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC14.57□□□□□ -0.08
SHOX2O60902 AC026120.1-201ENST00000611536 926 ntBASIC14.57□□□□□ -0.08
SHOX2O60902 LINC00628-201ENST00000628516 1289 ntBASIC14.57□□□□□ -0.08
SHOX2O60902 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
SHOX2O60902 NOBOX-201ENST00000467773 2076 ntTSL 5 BASIC14.57□□□□□ -0.08
SHOX2O60902 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 ELMOD3-206ENST00000409890 2492 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
SHOX2O60902 NUDT9-203ENST00000473942 2458 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
SHOX2O60902 LOXL3-204ENST00000409549 2897 ntTSL 2 BASIC14.57□□□□□ -0.08
SHOX2O60902 LINC01756-201ENST00000417651 2148 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC14.57□□□□□ -0.08
SHOX2O60902 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 DAXX-202ENST00000374542 2613 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SHOX2O60902 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 BCL2L1-203ENST00000376062 2578 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 COX7A2L-202ENST00000378669 3056 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
SHOX2O60902 ZNF571-AS1-203ENST00000586139 2684 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC14.56□□□□□ -0.08
SHOX2O60902 UBE2I-202ENST00000355803 3253 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
SHOX2O60902 KIF9-207ENST00000444589 2791 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.56□□□□□ -0.08
SHOX2O60902 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms