Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
NPAS3Q8IXF0 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
NPAS3Q8IXF0 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
NPAS3Q8IXF0 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
NPAS3Q8IXF0 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
NPAS3Q8IXF0 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15□□□□□ -0.01
NPAS3Q8IXF0 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
NPAS3Q8IXF0 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
NPAS3Q8IXF0 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
NPAS3Q8IXF0 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
NPAS3Q8IXF0 GUSBP10-201ENST00000417412 665 ntBASIC15□□□□□ -0.01
NPAS3Q8IXF0 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 AL512306.1-201ENST00000432698 848 ntBASIC15□□□□□ -0.01
NPAS3Q8IXF0 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC15□□□□□ -0.01
NPAS3Q8IXF0 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 AC092638.2-201ENST00000441105 947 ntBASIC15□□□□□ -0.01
NPAS3Q8IXF0 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 CD164-210ENST00000512821 964 ntTSL 2 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 PTK2-225ENST00000520892 571 ntTSL 4 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 NEU3-207ENST00000534628 746 ntTSL 2 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 CR383656.3-201ENST00000551315 183 ntBASIC15□□□□□ -0.01
NPAS3Q8IXF0 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 MIR6756-201ENST00000616240 63 ntBASIC15□□□□□ -0.01
NPAS3Q8IXF0 AL591471.1-201ENST00000621855 229 ntBASIC15□□□□□ -0.01
NPAS3Q8IXF0 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15□□□□□ -0.01
NPAS3Q8IXF0 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC15□□□□□ -0.01
NPAS3Q8IXF0 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15□□□□□ -0.01
NPAS3Q8IXF0 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
NPAS3Q8IXF0 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
NPAS3Q8IXF0 LINC01815-202ENST00000641468 1409 ntBASIC15□□□□□ -0.01
NPAS3Q8IXF0 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC15□□□□□ -0.01
NPAS3Q8IXF0 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15□□□□□ -0.01
NPAS3Q8IXF0 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
NPAS3Q8IXF0 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 MIR645-201ENST00000385283 94 ntBASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 AC004837.1-201ENST00000446267 564 ntBASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 AC109587.1-201ENST00000482368 962 ntTSL 3 BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 AL390728.6-201ENST00000566446 1246 ntBASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NPAS3Q8IXF0 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NPAS3Q8IXF0 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.98□□□□□ -0.01
NPAS3Q8IXF0 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NPAS3Q8IXF0 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
NPAS3Q8IXF0 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.98□□□□□ -0.01
NPAS3Q8IXF0 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14.98□□□□□ -0.01
NPAS3Q8IXF0 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NPAS3Q8IXF0 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NPAS3Q8IXF0 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
NPAS3Q8IXF0 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.98□□□□□ -0.01
NPAS3Q8IXF0 AC091951.1-201ENST00000512854 2465 ntBASIC14.98□□□□□ -0.01
NPAS3Q8IXF0 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
NPAS3Q8IXF0 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.98□□□□□ -0.01
NPAS3Q8IXF0 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms