Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL18A1P39060 KRT18P33-201ENST00000398525 1043 ntBASIC18.5■□□□□ 0.55
COL18A1P39060 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC18.5■□□□□ 0.55
COL18A1P39060 HNRNPA1P42-201ENST00000458678 957 ntBASIC18.5■□□□□ 0.55
COL18A1P39060 AC112250.1-201ENST00000504640 745 ntBASIC18.5■□□□□ 0.55
COL18A1P39060 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC18.5■□□□□ 0.55
COL18A1P39060 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL18A1P39060 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC18.5■□□□□ 0.55
COL18A1P39060 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
COL18A1P39060 CR392039.1-201ENST00000623217 204 ntBASIC18.5■□□□□ 0.55
COL18A1P39060 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC18.5■□□□□ 0.55
COL18A1P39060 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
COL18A1P39060 FGD5P1-202ENST00000614866 2498 ntBASIC18.5■□□□□ 0.55
COL18A1P39060 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL18A1P39060 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL18A1P39060 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL18A1P39060 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL18A1P39060 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
COL18A1P39060 POLL-206ENST00000370172 2308 ntTSL 2 BASIC18.5■□□□□ 0.55
COL18A1P39060 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL18A1P39060 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL18A1P39060 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
COL18A1P39060 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC18.5■□□□□ 0.55
COL18A1P39060 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL18A1P39060 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL18A1P39060 MIR1307-201ENST00000408840 149 ntBASIC18.5■□□□□ 0.55
COL18A1P39060 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC18.5■□□□□ 0.55
COL18A1P39060 BMF-206ENST00000558774 671 ntTSL 3 BASIC18.5■□□□□ 0.55
COL18A1P39060 AL162731.1-201ENST00000613248 876 ntTSL 3 BASIC18.5■□□□□ 0.55
COL18A1P39060 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC18.5■□□□□ 0.55
COL18A1P39060 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
COL18A1P39060 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC18.49■□□□□ 0.55
COL18A1P39060 AP001267.2-201ENST00000532619 2086 ntBASIC18.49■□□□□ 0.55
COL18A1P39060 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL18A1P39060 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC18.49■□□□□ 0.55
COL18A1P39060 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
COL18A1P39060 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL18A1P39060 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL18A1P39060 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
COL18A1P39060 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
COL18A1P39060 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL18A1P39060 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC18.49■□□□□ 0.55
COL18A1P39060 AC064850.1-201ENST00000413279 1398 ntBASIC18.49■□□□□ 0.55
COL18A1P39060 AC126177.1-201ENST00000547829 2218 ntBASIC18.49■□□□□ 0.55
COL18A1P39060 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
COL18A1P39060 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL18A1P39060 SERBP1P2-201ENST00000436888 1164 ntBASIC18.49■□□□□ 0.55
COL18A1P39060 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC18.49■□□□□ 0.55
COL18A1P39060 DUT-207ENST00000559416 635 ntTSL 2 BASIC18.49■□□□□ 0.55
COL18A1P39060 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC18.49■□□□□ 0.55
COL18A1P39060 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC18.49■□□□□ 0.55
COL18A1P39060 AC005746.3-201ENST00000614751 393 ntBASIC18.49■□□□□ 0.55
COL18A1P39060 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC18.49■□□□□ 0.55
COL18A1P39060 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL18A1P39060 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL18A1P39060 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
COL18A1P39060 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC18.49■□□□□ 0.55
COL18A1P39060 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL18A1P39060 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL18A1P39060 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL18A1P39060 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL18A1P39060 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL18A1P39060 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
COL18A1P39060 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL18A1P39060 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL18A1P39060 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL18A1P39060 AL590824.1-201ENST00000403828 1349 ntBASIC18.48■□□□□ 0.55
COL18A1P39060 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL18A1P39060 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL18A1P39060 FES-204ENST00000414248 2327 ntTSL 2 BASIC18.48■□□□□ 0.55
COL18A1P39060 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC18.48■□□□□ 0.55
COL18A1P39060 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL18A1P39060 U73169.1-201ENST00000395152 367 ntBASIC18.48■□□□□ 0.55
COL18A1P39060 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
COL18A1P39060 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL18A1P39060 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC18.48■□□□□ 0.55
COL18A1P39060 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC18.48■□□□□ 0.55
COL18A1P39060 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC18.48■□□□□ 0.55
COL18A1P39060 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC18.48■□□□□ 0.55
COL18A1P39060 RNU1-80P-201ENST00000459500 161 ntBASIC18.48■□□□□ 0.55
COL18A1P39060 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC18.48■□□□□ 0.55
COL18A1P39060 SRPK2P-201ENST00000523408 1100 ntBASIC18.48■□□□□ 0.55
COL18A1P39060 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL18A1P39060 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC18.48■□□□□ 0.55
COL18A1P39060 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC18.48■□□□□ 0.55
COL18A1P39060 AC080013.5-201ENST00000607044 679 ntBASIC18.48■□□□□ 0.55
COL18A1P39060 AC245369.7-201ENST00000631386 350 ntBASIC18.48■□□□□ 0.55
COL18A1P39060 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC18.48■□□□□ 0.55
COL18A1P39060 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
COL18A1P39060 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL18A1P39060 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC18.48■□□□□ 0.55
COL18A1P39060 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL18A1P39060 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
COL18A1P39060 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL18A1P39060 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
COL18A1P39060 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
COL18A1P39060 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL18A1P39060 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
COL18A1P39060 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.48■□□□□ 0.55
COL18A1P39060 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms