Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PGGHG-204ENST00000409655 2963 ntTSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC13□□□□□ -0.33
MMP28Q9H239 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
MMP28Q9H239 COG6-202ENST00000416691 5257 ntTSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC13□□□□□ -0.33
MMP28Q9H239 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13□□□□□ -0.33
MMP28Q9H239 DLGAP3-201ENST00000235180 3587 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
MMP28Q9H239 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
MMP28Q9H239 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC12.99□□□□□ -0.33
MMP28Q9H239 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC12.99□□□□□ -0.33
MMP28Q9H239 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC12.99□□□□□ -0.33
MMP28Q9H239 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 CALD1-205ENST00000422748 2665 ntTSL 2 BASIC12.99□□□□□ -0.33
MMP28Q9H239 TCTN2-202ENST00000426174 2513 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
MMP28Q9H239 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC12.99□□□□□ -0.33
MMP28Q9H239 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 GOLGA6L10-209ENST00000621197 4160 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
MMP28Q9H239 DNAJA4-203ENST00000394855 3245 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
MMP28Q9H239 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 WRB-204ENST00000398753 699 ntTSL 3 BASIC12.99□□□□□ -0.33
MMP28Q9H239 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
MMP28Q9H239 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
MMP28Q9H239 BASP1P1-201ENST00000430708 665 ntBASIC12.99□□□□□ -0.33
MMP28Q9H239 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
MMP28Q9H239 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC12.99□□□□□ -0.33
MMP28Q9H239 SERBP1P3-201ENST00000459980 809 ntBASIC12.99□□□□□ -0.33
MMP28Q9H239 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC12.99□□□□□ -0.33
MMP28Q9H239 HLA-V-204ENST00000476601 1289 ntBASIC12.99□□□□□ -0.33
MMP28Q9H239 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC12.99□□□□□ -0.33
MMP28Q9H239 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC12.99□□□□□ -0.33
MMP28Q9H239 AC140878.1-201ENST00000565277 250 ntBASIC12.99□□□□□ -0.33
MMP28Q9H239 AC051619.7-201ENST00000568314 623 ntBASIC12.99□□□□□ -0.33
MMP28Q9H239 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC12.99□□□□□ -0.33
MMP28Q9H239 ZNF519-206ENST00000589498 2117 ntTSL 2 BASIC12.99□□□□□ -0.33
MMP28Q9H239 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC12.99□□□□□ -0.33
MMP28Q9H239 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 AC239800.4-201ENST00000603712 296 ntBASIC12.99□□□□□ -0.33
MMP28Q9H239 GOLGA8IP-202ENST00000611635 2100 ntBASIC12.99□□□□□ -0.33
MMP28Q9H239 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC12.99□□□□□ -0.33
MMP28Q9H239 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
MMP28Q9H239 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
MMP28Q9H239 SEZ6L-201ENST00000248933 3248 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 SEZ6L-210ENST00000629590 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
MMP28Q9H239 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC12.99□□□□□ -0.33
MMP28Q9H239 AMOTL2-202ENST00000422605 4335 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
MMP28Q9H239 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
MMP28Q9H239 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC12.99□□□□□ -0.33
MMP28Q9H239 TUBGCP5-208ENST00000620435 3342 ntTSL 2 BASIC12.98□□□□□ -0.33
MMP28Q9H239 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
MMP28Q9H239 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC12.98□□□□□ -0.33
MMP28Q9H239 C1S-202ENST00000360817 2635 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
MMP28Q9H239 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
MMP28Q9H239 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC12.98□□□□□ -0.33
MMP28Q9H239 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
MMP28Q9H239 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
MMP28Q9H239 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
MMP28Q9H239 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
MMP28Q9H239 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
MMP28Q9H239 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
MMP28Q9H239 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
MMP28Q9H239 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
MMP28Q9H239 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
MMP28Q9H239 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC12.98□□□□□ -0.33
MMP28Q9H239 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
MMP28Q9H239 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
MMP28Q9H239 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
MMP28Q9H239 CENPM-205ENST00000404067 905 ntTSL 3 BASIC12.98□□□□□ -0.33
MMP28Q9H239 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
MMP28Q9H239 AC055876.3-201ENST00000431496 288 ntBASIC12.98□□□□□ -0.33
MMP28Q9H239 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC12.98□□□□□ -0.33
MMP28Q9H239 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms