Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 AC120045.2-201ENST00000567334 178 ntBASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 NCLP1-201ENST00000445357 1963 ntBASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 SH2D3C-201ENST00000314830 3124 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 PJA1-203ENST00000374583 2692 ntAPPRIS P4 BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 RN7SKP230-201ENST00000365642 335 ntBASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 DHDH-204ENST00000523250 634 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 AP001582.1-201ENST00000525856 295 ntBASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 AC135586.1-201ENST00000539323 574 ntBASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 AC025678.2-201ENST00000562061 970 ntBASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 HPX-201ENST00000265983 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 INTS4P2-202ENST00000614726 2019 ntBASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 CCBE1-201ENST00000398179 5979 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 RHPN1-AS1-201ENST00000518049 1918 ntBASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC28BQ9BUN5 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC28BQ9BUN5 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms