Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC16.64■□□□□ 0.25
ERCC4Q92889 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.64■□□□□ 0.25
ERCC4Q92889 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.64■□□□□ 0.25
ERCC4Q92889 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.64■□□□□ 0.25
ERCC4Q92889 AC008494.3-201ENST00000606615 944 ntBASIC16.64■□□□□ 0.25
ERCC4Q92889 WFDC1-204ENST00000613603 549 ntBASIC16.64■□□□□ 0.25
ERCC4Q92889 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
ERCC4Q92889 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ERCC4Q92889 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ERCC4Q92889 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ERCC4Q92889 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ERCC4Q92889 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ERCC4Q92889 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ERCC4Q92889 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
ERCC4Q92889 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
ERCC4Q92889 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ERCC4Q92889 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ERCC4Q92889 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ERCC4Q92889 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ERCC4Q92889 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ERCC4Q92889 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ERCC4Q92889 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ERCC4Q92889 STK40-201ENST00000359297 4837 ntTSL 2 BASIC16.63■□□□□ 0.25
ERCC4Q92889 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ERCC4Q92889 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC16.63■□□□□ 0.25
ERCC4Q92889 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
ERCC4Q92889 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ERCC4Q92889 AC009093.2-202ENST00000620513 2079 ntBASIC16.63■□□□□ 0.25
ERCC4Q92889 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
ERCC4Q92889 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
ERCC4Q92889 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ERCC4Q92889 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ERCC4Q92889 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
ERCC4Q92889 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ERCC4Q92889 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
ERCC4Q92889 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
ERCC4Q92889 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
ERCC4Q92889 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
ERCC4Q92889 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ERCC4Q92889 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ERCC4Q92889 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC16.63■□□□□ 0.25
ERCC4Q92889 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
ERCC4Q92889 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.63■□□□□ 0.25
ERCC4Q92889 DFFBP1-201ENST00000433250 979 ntBASIC16.63■□□□□ 0.25
ERCC4Q92889 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC16.63■□□□□ 0.25
ERCC4Q92889 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.63■□□□□ 0.25
ERCC4Q92889 API5-211ENST00000534695 560 ntTSL 5 BASIC16.63■□□□□ 0.25
ERCC4Q92889 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
ERCC4Q92889 PAM16-204ENST00000571941 674 ntTSL 3 BASIC16.63■□□□□ 0.25
ERCC4Q92889 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC16.63■□□□□ 0.25
ERCC4Q92889 TMEM261P1-201ENST00000604899 340 ntBASIC16.63■□□□□ 0.25
ERCC4Q92889 METTL26-214ENST00000614890 801 ntTSL 3 BASIC16.63■□□□□ 0.25
ERCC4Q92889 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC16.63■□□□□ 0.25
ERCC4Q92889 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ERCC4Q92889 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ERCC4Q92889 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC16.63■□□□□ 0.25
ERCC4Q92889 CLUHP2-201ENST00000426660 1303 ntBASIC16.63■□□□□ 0.25
ERCC4Q92889 KRT8P35-201ENST00000483942 1338 ntBASIC16.63■□□□□ 0.25
ERCC4Q92889 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
ERCC4Q92889 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ERCC4Q92889 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
ERCC4Q92889 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC16.63■□□□□ 0.25
ERCC4Q92889 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
ERCC4Q92889 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ERCC4Q92889 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ERCC4Q92889 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC16.63■□□□□ 0.25
ERCC4Q92889 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ERCC4Q92889 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
ERCC4Q92889 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC16.63■□□□□ 0.25
ERCC4Q92889 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC16.62■□□□□ 0.25
ERCC4Q92889 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC16.62■□□□□ 0.25
ERCC4Q92889 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC16.62■□□□□ 0.25
ERCC4Q92889 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC16.62■□□□□ 0.25
ERCC4Q92889 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
ERCC4Q92889 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC16.62■□□□□ 0.25
ERCC4Q92889 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
ERCC4Q92889 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
ERCC4Q92889 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
ERCC4Q92889 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
ERCC4Q92889 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 AC099521.3-201ENST00000624251 2938 ntBASIC16.62■□□□□ 0.25
ERCC4Q92889 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
ERCC4Q92889 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.62■□□□□ 0.25
ERCC4Q92889 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC16.62■□□□□ 0.25
ERCC4Q92889 B9D1-203ENST00000395615 805 ntTSL 3 BASIC16.62■□□□□ 0.25
ERCC4Q92889 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC16.62■□□□□ 0.25
ERCC4Q92889 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.62■□□□□ 0.25
ERCC4Q92889 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms