Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
NKX2-1P43699 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
NKX2-1P43699 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC12.03□□□□□ -0.48
NKX2-1P43699 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC12.03□□□□□ -0.48
NKX2-1P43699 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC12.03□□□□□ -0.48
NKX2-1P43699 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC12.03□□□□□ -0.48
NKX2-1P43699 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC12.03□□□□□ -0.48
NKX2-1P43699 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC12.03□□□□□ -0.48
NKX2-1P43699 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
NKX2-1P43699 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC12.03□□□□□ -0.48
NKX2-1P43699 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC12.03□□□□□ -0.48
NKX2-1P43699 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 RPSAP43-201ENST00000402237 625 ntBASIC12.03□□□□□ -0.48
NKX2-1P43699 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC12.03□□□□□ -0.48
NKX2-1P43699 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC12.03□□□□□ -0.48
NKX2-1P43699 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC12.03□□□□□ -0.48
NKX2-1P43699 TIMM17BP1-201ENST00000545713 516 ntBASIC12.03□□□□□ -0.48
NKX2-1P43699 AL512361.1-201ENST00000554200 418 ntBASIC12.03□□□□□ -0.48
NKX2-1P43699 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
NKX2-1P43699 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC12.03□□□□□ -0.48
NKX2-1P43699 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 AC004835.2-201ENST00000603762 682 ntBASIC12.03□□□□□ -0.48
NKX2-1P43699 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 AL008727.1-201ENST00000564460 4728 ntTSL 2 BASIC12.03□□□□□ -0.48
NKX2-1P43699 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC12.03□□□□□ -0.48
NKX2-1P43699 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
NKX2-1P43699 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC12.03□□□□□ -0.48
NKX2-1P43699 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC12.03□□□□□ -0.48
NKX2-1P43699 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC12.03□□□□□ -0.48
NKX2-1P43699 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
NKX2-1P43699 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
NKX2-1P43699 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC12.02□□□□□ -0.48
NKX2-1P43699 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
NKX2-1P43699 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.48
NKX2-1P43699 NIN-206ENST00000453196 6785 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
NKX2-1P43699 SCOC-210ENST00000608372 5129 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
NKX2-1P43699 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
NKX2-1P43699 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC12.02□□□□□ -0.48
NKX2-1P43699 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC12.02□□□□□ -0.48
NKX2-1P43699 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC12.02□□□□□ -0.48
NKX2-1P43699 TRAF6-202ENST00000526995 4627 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
NKX2-1P43699 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.02□□□□□ -0.48
NKX2-1P43699 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
NKX2-1P43699 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
NKX2-1P43699 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
NKX2-1P43699 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC12.02□□□□□ -0.49
NKX2-1P43699 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
NKX2-1P43699 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
NKX2-1P43699 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
NKX2-1P43699 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
NKX2-1P43699 STOM-202ENST00000347359 870 ntTSL 2 BASIC12.02□□□□□ -0.49
NKX2-1P43699 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC12.02□□□□□ -0.49
NKX2-1P43699 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC12.02□□□□□ -0.49
NKX2-1P43699 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
NKX2-1P43699 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
NKX2-1P43699 RPL30-202ENST00000396070 440 ntTSL 2 BASIC12.02□□□□□ -0.49
NKX2-1P43699 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
NKX2-1P43699 MPV17-208ENST00000405076 603 ntTSL 5 BASIC12.02□□□□□ -0.49
NKX2-1P43699 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC12.02□□□□□ -0.49
NKX2-1P43699 TLE1P1-201ENST00000422965 589 ntBASIC12.02□□□□□ -0.49
NKX2-1P43699 NUS1P3-201ENST00000423502 862 ntBASIC12.02□□□□□ -0.49
NKX2-1P43699 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
NKX2-1P43699 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC12.02□□□□□ -0.49
NKX2-1P43699 AC007969.1-201ENST00000433675 447 ntBASIC12.02□□□□□ -0.49
NKX2-1P43699 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
NKX2-1P43699 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
NKX2-1P43699 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
NKX2-1P43699 AC112482.1-201ENST00000492080 688 ntBASIC12.02□□□□□ -0.49
NKX2-1P43699 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC12.02□□□□□ -0.49
NKX2-1P43699 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC12.02□□□□□ -0.49
NKX2-1P43699 AC051619.7-201ENST00000568314 623 ntBASIC12.02□□□□□ -0.49
NKX2-1P43699 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC12.02□□□□□ -0.49
NKX2-1P43699 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC12.02□□□□□ -0.49
NKX2-1P43699 AC010327.4-202ENST00000591484 748 ntBASIC12.02□□□□□ -0.49
NKX2-1P43699 GPER1-207ENST00000619052 571 ntTSL 2 BASIC12.02□□□□□ -0.49
NKX2-1P43699 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC12.02□□□□□ -0.49
NKX2-1P43699 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC12.02□□□□□ -0.49
NKX2-1P43699 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
NKX2-1P43699 GALNT16-201ENST00000337827 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms