Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A3P12111 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A3P12111 PHBP3-201ENST00000412562 819 ntBASIC14.59□□□□□ -0.07
COL6A3P12111 AL121994.1-201ENST00000413189 402 ntBASIC14.59□□□□□ -0.07
COL6A3P12111 PRDX3P2-201ENST00000447051 611 ntBASIC14.59□□□□□ -0.07
COL6A3P12111 AC007992.1-201ENST00000513953 953 ntBASIC14.59□□□□□ -0.07
COL6A3P12111 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC14.59□□□□□ -0.07
COL6A3P12111 AL352977.2-201ENST00000557101 547 ntTSL 4 BASIC14.59□□□□□ -0.07
COL6A3P12111 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC14.59□□□□□ -0.07
COL6A3P12111 AL356740.1-201ENST00000602192 1297 ntBASIC14.59□□□□□ -0.07
COL6A3P12111 AL139260.3-204ENST00000621281 609 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
COL6A3P12111 AC245369.8-201ENST00000636589 306 ntBASIC14.59□□□□□ -0.07
COL6A3P12111 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC14.59□□□□□ -0.07
COL6A3P12111 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
COL6A3P12111 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A3P12111 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A3P12111 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
COL6A3P12111 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A3P12111 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.59□□□□□ -0.07
COL6A3P12111 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A3P12111 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A3P12111 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A3P12111 AC096677.3-201ENST00000413162 387 ntBASIC14.59□□□□□ -0.07
COL6A3P12111 TMEM256P1-201ENST00000430550 340 ntBASIC14.59□□□□□ -0.07
COL6A3P12111 RN7SL479P-201ENST00000472003 300 ntBASIC14.59□□□□□ -0.07
COL6A3P12111 AC022424.2-201ENST00000514848 454 ntTSL 2 BASIC14.59□□□□□ -0.07
COL6A3P12111 AC009779.7-201ENST00000609031 469 ntBASIC14.59□□□□□ -0.07
COL6A3P12111 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A3P12111 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
COL6A3P12111 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A3P12111 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A3P12111 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
COL6A3P12111 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A3P12111 CEP83-AS1-201ENST00000623122 2482 ntBASIC14.59□□□□□ -0.07
COL6A3P12111 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC14.59□□□□□ -0.07
COL6A3P12111 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC14.59□□□□□ -0.07
COL6A3P12111 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A3P12111 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A3P12111 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A3P12111 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC14.59□□□□□ -0.07
COL6A3P12111 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A3P12111 PDZD11-201ENST00000239666 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A3P12111 OR52N1-201ENST00000317078 963 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
COL6A3P12111 AC092810.2-201ENST00000431570 362 ntBASIC14.59□□□□□ -0.07
COL6A3P12111 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC14.59□□□□□ -0.07
COL6A3P12111 AC073465.1-201ENST00000456671 464 ntBASIC14.59□□□□□ -0.07
COL6A3P12111 KRT18P42-201ENST00000505048 1255 ntBASIC14.59□□□□□ -0.07
COL6A3P12111 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
COL6A3P12111 AC020909.3-201ENST00000598194 375 ntTSL 3 BASIC14.59□□□□□ -0.07
COL6A3P12111 SNU13-201ENST00000215956 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A3P12111 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
COL6A3P12111 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL6A3P12111 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
COL6A3P12111 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC14.58□□□□□ -0.07
COL6A3P12111 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL6A3P12111 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A3P12111 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A3P12111 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A3P12111 NRSN1-201ENST00000378475 800 ntTSL 3 BASIC14.58□□□□□ -0.08
COL6A3P12111 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
COL6A3P12111 BICD1P1-201ENST00000457832 1222 ntBASIC14.58□□□□□ -0.08
COL6A3P12111 AC024475.1-201ENST00000528480 605 ntTSL 5 BASIC14.58□□□□□ -0.08
COL6A3P12111 EIF5A-207ENST00000572815 811 ntTSL 5 BASIC14.58□□□□□ -0.08
COL6A3P12111 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A3P12111 AL078624.1-201ENST00000604004 547 ntBASIC14.58□□□□□ -0.08
COL6A3P12111 AL669831.3-208ENST00000634337 891 ntTSL 5 BASIC14.58□□□□□ -0.08
COL6A3P12111 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A3P12111 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A3P12111 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A3P12111 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A3P12111 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.58□□□□□ -0.08
COL6A3P12111 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
COL6A3P12111 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A3P12111 AC064850.1-201ENST00000413279 1398 ntBASIC14.58□□□□□ -0.08
COL6A3P12111 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
COL6A3P12111 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A3P12111 AC006987.1-201ENST00000413610 527 ntBASIC14.58□□□□□ -0.08
COL6A3P12111 SMCO4-202ENST00000525141 889 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
COL6A3P12111 PHBP18-201ENST00000546648 813 ntBASIC14.58□□□□□ -0.08
COL6A3P12111 ZNF677-207ENST00000598806 701 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A3P12111 AC245884.8-201ENST00000599382 880 ntBASIC14.58□□□□□ -0.08
COL6A3P12111 PSMG3-AS1-207ENST00000612019 586 ntTSL 4 BASIC14.58□□□□□ -0.08
COL6A3P12111 AC005609.1-201ENST00000625195 617 ntTSL 5 BASIC14.58□□□□□ -0.08
COL6A3P12111 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
COL6A3P12111 COMMD10-207ENST00000632434 1433 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A3P12111 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A3P12111 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
COL6A3P12111 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A3P12111 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A3P12111 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A3P12111 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A3P12111 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A3P12111 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A3P12111 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A3P12111 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A3P12111 HBD-202ENST00000380299 785 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A3P12111 CMTM5-204ENST00000382809 378 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A3P12111 AC069503.1-201ENST00000538710 816 ntTSL 2 BASIC14.57□□□□□ -0.08
COL6A3P12111 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
COL6A3P12111 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms