Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TPM1P09493 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.19■□□□□ 0.18
TPM1P09493 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
TPM1P09493 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC16.19■□□□□ 0.18
TPM1P09493 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC16.19■□□□□ 0.18
TPM1P09493 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC16.19■□□□□ 0.18
TPM1P09493 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
TPM1P09493 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 AC092580.3-201ENST00000430932 139 ntBASIC16.19■□□□□ 0.18
TPM1P09493 AC241585.1-201ENST00000433527 519 ntBASIC16.19■□□□□ 0.18
TPM1P09493 AC114812.1-204ENST00000449669 728 ntBASIC16.19■□□□□ 0.18
TPM1P09493 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC16.19■□□□□ 0.18
TPM1P09493 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.19■□□□□ 0.18
TPM1P09493 AC026434.2-201ENST00000506094 1078 ntBASIC16.19■□□□□ 0.18
TPM1P09493 AC097493.3-201ENST00000509725 367 ntBASIC16.19■□□□□ 0.18
TPM1P09493 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 IGHV3-42-201ENST00000520410 361 ntBASIC16.19■□□□□ 0.18
TPM1P09493 AC135586.1-201ENST00000539323 574 ntBASIC16.19■□□□□ 0.18
TPM1P09493 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.19■□□□□ 0.18
TPM1P09493 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.19■□□□□ 0.18
TPM1P09493 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.19■□□□□ 0.18
TPM1P09493 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.19■□□□□ 0.18
TPM1P09493 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC16.19■□□□□ 0.18
TPM1P09493 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC16.19■□□□□ 0.18
TPM1P09493 FAM193A-201ENST00000324666 4846 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC16.19■□□□□ 0.18
TPM1P09493 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC16.19■□□□□ 0.18
TPM1P09493 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC16.19■□□□□ 0.18
TPM1P09493 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC16.19■□□□□ 0.18
TPM1P09493 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 KRT8P35-201ENST00000483942 1338 ntBASIC16.19■□□□□ 0.18
TPM1P09493 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TPM1P09493 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC16.18■□□□□ 0.18
TPM1P09493 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC16.18■□□□□ 0.18
TPM1P09493 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
TPM1P09493 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
TPM1P09493 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TPM1P09493 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC16.18■□□□□ 0.18
TPM1P09493 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TPM1P09493 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC16.18■□□□□ 0.18
TPM1P09493 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
TPM1P09493 BAHD1-203ENST00000561234 4698 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.18■□□□□ 0.18
TPM1P09493 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC16.18■□□□□ 0.18
TPM1P09493 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TPM1P09493 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TPM1P09493 LSM5-207ENST00000410044 687 ntTSL 3 BASIC16.18■□□□□ 0.18
TPM1P09493 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.18■□□□□ 0.18
TPM1P09493 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 FAM86GP-201ENST00000448322 971 ntBASIC16.18■□□□□ 0.18
TPM1P09493 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.18■□□□□ 0.18
TPM1P09493 RN7SL399P-201ENST00000471648 279 ntBASIC16.18■□□□□ 0.18
TPM1P09493 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.18■□□□□ 0.18
TPM1P09493 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.18■□□□□ 0.18
TPM1P09493 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC16.18■□□□□ 0.18
TPM1P09493 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.18■□□□□ 0.18
TPM1P09493 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.18■□□□□ 0.18
TPM1P09493 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.18■□□□□ 0.18
TPM1P09493 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.18■□□□□ 0.18
TPM1P09493 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms