Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 ERP29P1-201ENST00000442902 706 ntBASIC13.18□□□□□ -0.3
SPTA1P02549 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC13.18□□□□□ -0.3
SPTA1P02549 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC13.18□□□□□ -0.3
SPTA1P02549 GACAT2-201ENST00000579368 818 ntTSL 2 BASIC13.18□□□□□ -0.3
SPTA1P02549 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC13.18□□□□□ -0.3
SPTA1P02549 TRMT112P3-201ENST00000580149 358 ntBASIC13.18□□□□□ -0.3
SPTA1P02549 RN7SL357P-201ENST00000581065 298 ntBASIC13.18□□□□□ -0.3
SPTA1P02549 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC13.18□□□□□ -0.3
SPTA1P02549 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC13.18□□□□□ -0.3
SPTA1P02549 AP000322.3-201ENST00000608665 388 ntBASIC13.18□□□□□ -0.3
SPTA1P02549 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.18□□□□□ -0.3
SPTA1P02549 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
SPTA1P02549 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
SPTA1P02549 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC13.18□□□□□ -0.3
SPTA1P02549 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC13.18□□□□□ -0.3
SPTA1P02549 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC13.18□□□□□ -0.3
SPTA1P02549 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
SPTA1P02549 RN7SL173P-201ENST00000461853 292 ntBASIC13.18□□□□□ -0.3
SPTA1P02549 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
SPTA1P02549 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC13.18□□□□□ -0.3
SPTA1P02549 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC13.18□□□□□ -0.3
SPTA1P02549 AC106047.2-201ENST00000511723 743 ntBASIC13.18□□□□□ -0.3
SPTA1P02549 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC13.18□□□□□ -0.3
SPTA1P02549 AL450487.2-201ENST00000615934 407 ntBASIC13.18□□□□□ -0.3
SPTA1P02549 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC13.18□□□□□ -0.3
SPTA1P02549 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
SPTA1P02549 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC13.18□□□□□ -0.3
SPTA1P02549 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
SPTA1P02549 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC13.17□□□□□ -0.3
SPTA1P02549 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.17□□□□□ -0.3
SPTA1P02549 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC13.17□□□□□ -0.3
SPTA1P02549 MKL1-213ENST00000620651 3757 ntTSL 5 BASIC13.17□□□□□ -0.3
SPTA1P02549 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 STK33-217ENST00000534493 1895 ntTSL 2 BASIC13.17□□□□□ -0.3
SPTA1P02549 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC13.17□□□□□ -0.3
SPTA1P02549 SURF4-203ENST00000371991 715 ntTSL 3 BASIC13.17□□□□□ -0.3
SPTA1P02549 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
SPTA1P02549 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC13.17□□□□□ -0.3
SPTA1P02549 IGHV1-12-201ENST00000518307 205 ntBASIC13.17□□□□□ -0.3
SPTA1P02549 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC13.17□□□□□ -0.3
SPTA1P02549 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC13.17□□□□□ -0.3
SPTA1P02549 AC120498.5-201ENST00000561757 299 ntBASIC13.17□□□□□ -0.3
SPTA1P02549 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC13.17□□□□□ -0.3
SPTA1P02549 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC13.17□□□□□ -0.3
SPTA1P02549 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 AL137077.2-201ENST00000635124 1608 ntBASIC13.17□□□□□ -0.3
SPTA1P02549 PGR-210ENST00000619228 3038 ntTSL 5 BASIC13.17□□□□□ -0.3
SPTA1P02549 OR2I1P-209ENST00000641730 5365 ntBASIC13.17□□□□□ -0.3
SPTA1P02549 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC13.17□□□□□ -0.3
SPTA1P02549 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
SPTA1P02549 PRMT7-201ENST00000339507 4238 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
SPTA1P02549 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
SPTA1P02549 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC13.17□□□□□ -0.3
SPTA1P02549 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 PYY2-201ENST00000315776 282 ntBASIC13.17□□□□□ -0.3
SPTA1P02549 MIR566-201ENST00000385187 94 ntBASIC13.17□□□□□ -0.3
SPTA1P02549 NME4-203ENST00000397722 1232 ntTSL 2 BASIC13.17□□□□□ -0.3
SPTA1P02549 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
SPTA1P02549 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SPTA1P02549 AC026470.1-201ENST00000478038 846 ntBASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms