Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
PDLIM1O00151 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM1O00151 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM1O00151 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
PDLIM1O00151 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM1O00151 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
PDLIM1O00151 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC14.02□□□□□ -0.16
PDLIM1O00151 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM1O00151 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM1O00151 CICP1-201ENST00000416803 2410 ntBASIC14.02□□□□□ -0.16
PDLIM1O00151 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM1O00151 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM1O00151 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC14.02□□□□□ -0.16
PDLIM1O00151 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM1O00151 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC14.02□□□□□ -0.16
PDLIM1O00151 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM1O00151 KRTAP10-4-201ENST00000400374 1643 ntAPPRIS P2 BASIC14.02□□□□□ -0.16
PDLIM1O00151 Z97205.2-201ENST00000564697 1639 ntBASIC14.02□□□□□ -0.16
PDLIM1O00151 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM1O00151 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM1O00151 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM1O00151 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM1O00151 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.02□□□□□ -0.16
PDLIM1O00151 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC14.02□□□□□ -0.16
PDLIM1O00151 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM1O00151 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
PDLIM1O00151 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM1O00151 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM1O00151 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM1O00151 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
PDLIM1O00151 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM1O00151 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM1O00151 MIR661-201ENST00000384842 89 ntBASIC14.02□□□□□ -0.17
PDLIM1O00151 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.02□□□□□ -0.17
PDLIM1O00151 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
PDLIM1O00151 AC114501.2-201ENST00000439631 535 ntBASIC14.02□□□□□ -0.17
PDLIM1O00151 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.02□□□□□ -0.17
PDLIM1O00151 SDHAP3-202ENST00000515467 728 ntBASIC14.02□□□□□ -0.17
PDLIM1O00151 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM1O00151 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.02□□□□□ -0.17
PDLIM1O00151 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.02□□□□□ -0.17
PDLIM1O00151 AC044860.1-202ENST00000559481 777 ntBASIC14.02□□□□□ -0.17
PDLIM1O00151 SAMD11P1-201ENST00000571429 661 ntBASIC14.02□□□□□ -0.17
PDLIM1O00151 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.02□□□□□ -0.17
PDLIM1O00151 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.02□□□□□ -0.17
PDLIM1O00151 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.02□□□□□ -0.17
PDLIM1O00151 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.02□□□□□ -0.17
PDLIM1O00151 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM1O00151 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
PDLIM1O00151 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM1O00151 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM1O00151 C10orf90-202ENST00000356858 2995 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
PDLIM1O00151 DGKA-202ENST00000394147 2770 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
PDLIM1O00151 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC14.02□□□□□ -0.17
PDLIM1O00151 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM1O00151 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC14.02□□□□□ -0.17
PDLIM1O00151 CLCNKB-202ENST00000375679 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM1O00151 FAM214B-204ENST00000378566 2566 ntTSL 2 BASIC14.02□□□□□ -0.17
PDLIM1O00151 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM1O00151 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM1O00151 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC14.02□□□□□ -0.17
PDLIM1O00151 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC14.02□□□□□ -0.17
PDLIM1O00151 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
PDLIM1O00151 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
PDLIM1O00151 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM1O00151 AC131212.3-201ENST00000624087 4219 ntBASIC14.01□□□□□ -0.17
PDLIM1O00151 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM1O00151 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.01□□□□□ -0.17
PDLIM1O00151 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
PDLIM1O00151 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM1O00151 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.01□□□□□ -0.17
PDLIM1O00151 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.01□□□□□ -0.17
PDLIM1O00151 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.01□□□□□ -0.17
PDLIM1O00151 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM1O00151 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM1O00151 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM1O00151 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
PDLIM1O00151 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.01□□□□□ -0.17
PDLIM1O00151 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.01□□□□□ -0.17
PDLIM1O00151 TCAM1P-207ENST00000485295 1537 ntBASIC14.01□□□□□ -0.17
PDLIM1O00151 NLGN3-206ENST00000612180 3319 ntTSL 5 BASIC14.01□□□□□ -0.17
PDLIM1O00151 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.01□□□□□ -0.17
PDLIM1O00151 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM1O00151 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM1O00151 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
PDLIM1O00151 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM1O00151 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM1O00151 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM1O00151 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM1O00151 FAM207CP-201ENST00000443486 507 ntBASIC14.01□□□□□ -0.17
PDLIM1O00151 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.01□□□□□ -0.17
PDLIM1O00151 TSPY16P-201ENST00000449843 468 ntBASIC14.01□□□□□ -0.17
PDLIM1O00151 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
PDLIM1O00151 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM1O00151 ZNF148-206ENST00000485866 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM1O00151 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.01□□□□□ -0.17
PDLIM1O00151 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.01□□□□□ -0.17
PDLIM1O00151 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PDLIM1O00151 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.01□□□□□ -0.17
PDLIM1O00151 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms