Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC14.86□□□□□ -0.03
HLA-CQ95604 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-CQ95604 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-CQ95604 BX679664.3-201ENST00000414070 555 ntBASIC14.86□□□□□ -0.03
HLA-CQ95604 KCNK15-AS1-202ENST00000427303 528 ntTSL 5 BASIC14.86□□□□□ -0.03
HLA-CQ95604 AC025594.1-201ENST00000469533 543 ntBASIC14.86□□□□□ -0.03
HLA-CQ95604 AC113935.1-201ENST00000471722 555 ntBASIC14.86□□□□□ -0.03
HLA-CQ95604 AC147876.1-201ENST00000504408 322 ntBASIC14.86□□□□□ -0.03
HLA-CQ95604 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC14.86□□□□□ -0.03
HLA-CQ95604 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-CQ95604 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC14.86□□□□□ -0.03
HLA-CQ95604 RN7SL605P-201ENST00000577229 281 ntBASIC14.86□□□□□ -0.03
HLA-CQ95604 MIR4265-201ENST00000582152 99 ntBASIC14.86□□□□□ -0.03
HLA-CQ95604 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-CQ95604 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-CQ95604 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.86□□□□□ -0.03
HLA-CQ95604 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-CQ95604 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.86□□□□□ -0.03
HLA-CQ95604 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC14.86□□□□□ -0.03
HLA-CQ95604 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
HLA-CQ95604 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-CQ95604 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC14.86□□□□□ -0.03
HLA-CQ95604 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
HLA-CQ95604 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-CQ95604 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.86□□□□□ -0.03
HLA-CQ95604 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-CQ95604 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC14.86□□□□□ -0.03
HLA-CQ95604 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-CQ95604 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-CQ95604 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-CQ95604 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
HLA-CQ95604 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-CQ95604 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.86□□□□□ -0.03
HLA-CQ95604 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC14.85□□□□□ -0.03
HLA-CQ95604 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC14.85□□□□□ -0.03
HLA-CQ95604 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 LINC01101-201ENST00000622953 1884 ntBASIC14.85□□□□□ -0.03
HLA-CQ95604 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 AC022080.1-201ENST00000366255 781 ntBASIC14.85□□□□□ -0.03
HLA-CQ95604 JPT2-203ENST00000382711 894 ntTSL 4 BASIC14.85□□□□□ -0.03
HLA-CQ95604 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
HLA-CQ95604 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC14.85□□□□□ -0.03
HLA-CQ95604 GGTLC4P-201ENST00000402176 664 ntBASIC14.85□□□□□ -0.03
HLA-CQ95604 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
HLA-CQ95604 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
HLA-CQ95604 AL603841.1-201ENST00000430516 664 ntBASIC14.85□□□□□ -0.03
HLA-CQ95604 AL773545.2-201ENST00000442149 472 ntBASIC14.85□□□□□ -0.03
HLA-CQ95604 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 STK24P1-201ENST00000455035 1291 ntBASIC14.85□□□□□ -0.03
HLA-CQ95604 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC14.85□□□□□ -0.03
HLA-CQ95604 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
HLA-CQ95604 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC14.85□□□□□ -0.03
HLA-CQ95604 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC14.85□□□□□ -0.03
HLA-CQ95604 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.85□□□□□ -0.03
HLA-CQ95604 INO80E-209ENST00000567254 625 ntTSL 2 BASIC14.85□□□□□ -0.03
HLA-CQ95604 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC14.85□□□□□ -0.03
HLA-CQ95604 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC14.85□□□□□ -0.03
HLA-CQ95604 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC14.85□□□□□ -0.03
HLA-CQ95604 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 ESR1-214ENST00000638569 132 ntTSL 5 BASIC14.85□□□□□ -0.03
HLA-CQ95604 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 AC090616.6-203ENST00000579186 1945 ntBASIC14.85□□□□□ -0.03
HLA-CQ95604 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.85□□□□□ -0.03
HLA-CQ95604 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-CQ95604 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.85□□□□□ -0.03
HLA-CQ95604 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
HLA-CQ95604 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.84□□□□□ -0.03
HLA-CQ95604 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-CQ95604 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-CQ95604 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC14.84□□□□□ -0.03
HLA-CQ95604 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC14.84□□□□□ -0.03
HLA-CQ95604 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-CQ95604 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.84□□□□□ -0.03
HLA-CQ95604 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
HLA-CQ95604 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-CQ95604 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.84□□□□□ -0.03
HLA-CQ95604 AC006504.5-208ENST00000588784 2401 ntBASIC14.84□□□□□ -0.03
HLA-CQ95604 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC14.84□□□□□ -0.03
HLA-CQ95604 LAP3P2-201ENST00000454686 1454 ntBASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms