Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 FAM102A-202ENST00000373084 3352 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 ARHGAP6-201ENST00000303025 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 Z97180.1-201ENST00000445173 988 ntBASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AL450472.2-201ENST00000603663 1156 ntBASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AC244157.2-201ENST00000616239 1006 ntBASIC4.58□□□□□ -1.68
SYNE1Q8NF91 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 ARHGEF10L-203ENST00000375408 3685 ntTSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 PTK7-204ENST00000349241 3801 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 INVS-201ENST00000262456 2968 ntTSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 CORO1C-201ENST00000261401 3892 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 ACTG1P2-201ENST00000415776 1125 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 ACTG1P11-201ENST00000425411 1125 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 INO80C-210ENST00000590757 595 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AC004466.1-201ENST00000599515 1080 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 BNIP3P13-201ENST00000599968 566 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AC025181.2-201ENST00000606994 802 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AC005324.4-204ENST00000413242 4262 ntAPPRIS P5 TSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 MTMR2-201ENST00000346299 4681 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 MTMR2-203ENST00000393223 4681 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 GSN-206ENST00000394353 2311 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 RSPO2-201ENST00000276659 3111 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 IMP3P2-201ENST00000489760 475 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 CFL1-214ENST00000534769 758 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 MEG3_2.1-201ENST00000611456 105 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 ZACNP1-201ENST00000612259 710 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 YLPM1-207ENST00000552421 4899 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 KNDC1-202ENST00000368571 3925 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 OSBPL7-202ENST00000392507 3349 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 SAMD11P1-201ENST00000571429 661 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AC073352.2-201ENST00000609385 439 ntBASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms